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Cluster: Rep_499_CGC66

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_499_c_84 Rep_499_c_84_22 25726 26625 + 2.A.7.3.57
pfam Rep_499_c_84 Rep_499_c_84_23 26633 27283 + DUF3256
pfam Rep_499_c_84 Rep_499_c_84_24 27309 28397 - APH
CAZyme Rep_499_c_84 Rep_499_c_84_25 28427 31768 - GH2
TC Rep_499_c_84 Rep_499_c_84_26 31840 32730 - 2.A.115.1.2
CAZyme Rep_499_c_84 Rep_499_c_84_27 32850 34259 - GH109
CAZyme Rep_499_c_84 Rep_499_c_84_28 34672 37068 - CBM32
CAZyme Rep_499_c_84 Rep_499_c_84_29 37163 39874 - CBM32
pfam Rep_499_c_84 Rep_499_c_84_30 39895 41301 - F5_F8_type_C | BT_3987-like_N | BT_3987-like_N
pfam Rep_499_c_84 Rep_499_c_84_31 41321 43261 - SusD_RagB | SusD-like_3
TC Rep_499_c_84 Rep_499_c_84_32 43293 46652 - 1.B.14.6.1
Gene ID: Rep_499_c_84_22
Type: TC
Location: 25726 - 26625 (+)
Gene ID: Rep_499_c_84_23
Type: pfam
Location: 26633 - 27283 (+)
Gene ID: Rep_499_c_84_24
Type: pfam
Location: 27309 - 28397 (-)
Gene ID: Rep_499_c_84_25
Type: CAZyme
Location: 28427 - 31768 (-)
Gene ID: Rep_499_c_84_26
Type: TC
Location: 31840 - 32730 (-)
Gene ID: Rep_499_c_84_27
Type: CAZyme
Location: 32850 - 34259 (-)
Gene ID: Rep_499_c_84_28
Type: CAZyme
Location: 34672 - 37068 (-)
Gene ID: Rep_499_c_84_29
Type: CAZyme
Location: 37163 - 39874 (-)
Gene ID: Rep_499_c_84_30
Type: pfam
Location: 39895 - 41301 (-)
Gene ID: Rep_499_c_84_31
Type: pfam
Location: 41321 - 43261 (-)
Gene ID: Rep_499_c_84_32
Type: TC
Location: 43293 - 46652 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_499_c_84_28 vegan > omnivore 1.04184 0.01332

🧭 Explore Read Mapping of CGC

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