Cluster: Rep_499_CGC62
🧬 Cluster Details
- Gene Count: 16
- CAZyme Count: 6
- Substrate:
- Genome ID: Rep_499
- CGC Family ID: CGCFAM_05724
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_499_c_78 | Rep_499_c_78_19 | 35175 | 36869 | - | GH35 |
| CAZyme | Rep_499_c_78 | Rep_499_c_78_20 | 36878 | 38506 | - | GH144 |
| pfam | Rep_499_c_78 | Rep_499_c_78_21 | 38532 | 40013 | - | SusD_RagB | SusD-like_3 |
| TC | Rep_499_c_78 | Rep_499_c_78_22 | 40094 | 43135 | - | 1.B.14.6.1 |
| TF | Rep_499_c_78 | Rep_499_c_78_23 | 43857 | 47828 | - | HTH_AraC |
| CAZyme | Rep_499_c_78 | Rep_499_c_78_24 | 47996 | 49429 | - | CE20 |
| TC | Rep_499_c_78 | Rep_499_c_78_25 | 49696 | 52968 | + | 1.B.14.6.1 |
| pfam | Rep_499_c_78 | Rep_499_c_78_26 | 52997 | 54808 | + | SusD_RagB | SusD-like_3 |
| CAZyme | Rep_499_c_78 | Rep_499_c_78_27 | 54829 | 56643 | + | PL35 |
| CAZyme | Rep_499_c_78 | Rep_499_c_78_28 | 56668 | 58599 | + | PL35 |
| CAZyme | Rep_499_c_78 | Rep_499_c_78_29 | 58614 | 59789 | + | GH88 |
| NULL(UNKNOWN) | Rep_499_c_78 | Rep_499_c_78_30 | 59808 | 60281 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | Rep_499_c_78 | Rep_499_c_78_31 | 60318 | 62339 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_499_c_78 | Rep_499_c_78_32 | 62583 | 64262 | - | 2.A.53.3.9 |
| pfam | Rep_499_c_78 | Rep_499_c_78_33 | 64509 | 65087 | + | Ferritin | Rubrerythrin | RUBY_RBDX |
| TC | Rep_499_c_78 | Rep_499_c_78_34 | 65153 | 66724 | - | 3.D.10.1.4 |
Gene ID: Rep_499_c_78_19
Type: CAZyme
Location: 35175 - 36869 (-)
Type: CAZyme
Location: 35175 - 36869 (-)
Gene ID: Rep_499_c_78_20
Type: CAZyme
Location: 36878 - 38506 (-)
Type: CAZyme
Location: 36878 - 38506 (-)
Gene ID: Rep_499_c_78_21
Type: pfam
Location: 38532 - 40013 (-)
Type: pfam
Location: 38532 - 40013 (-)
Gene ID: Rep_499_c_78_22
Type: TC
Location: 40094 - 43135 (-)
Type: TC
Location: 40094 - 43135 (-)
Gene ID: Rep_499_c_78_23
Type: TF
Location: 43857 - 47828 (-)
Type: TF
Location: 43857 - 47828 (-)
Gene ID: Rep_499_c_78_24
Type: CAZyme
Location: 47996 - 49429 (-)
Type: CAZyme
Location: 47996 - 49429 (-)
Gene ID: Rep_499_c_78_25
Type: TC
Location: 49696 - 52968 (+)
Type: TC
Location: 49696 - 52968 (+)
Gene ID: Rep_499_c_78_26
Type: pfam
Location: 52997 - 54808 (+)
Type: pfam
Location: 52997 - 54808 (+)
Gene ID: Rep_499_c_78_27
Type: CAZyme
Location: 54829 - 56643 (+)
Type: CAZyme
Location: 54829 - 56643 (+)
Gene ID: Rep_499_c_78_28
Type: CAZyme
Location: 56668 - 58599 (+)
Type: CAZyme
Location: 56668 - 58599 (+)
Gene ID: Rep_499_c_78_29
Type: CAZyme
Location: 58614 - 59789 (+)
Type: CAZyme
Location: 58614 - 59789 (+)
Gene ID: Rep_499_c_78_30
Type:
Location: 59808 - 60281 (+)
Type:
Location: 59808 - 60281 (+)
Gene ID: Rep_499_c_78_31
Type:
Location: 60318 - 62339 (+)
Type:
Location: 60318 - 62339 (+)
Gene ID: Rep_499_c_78_32
Type: TC
Location: 62583 - 64262 (-)
Type: TC
Location: 62583 - 64262 (-)
Gene ID: Rep_499_c_78_33
Type: pfam
Location: 64509 - 65087 (+)
Type: pfam
Location: 64509 - 65087 (+)
Gene ID: Rep_499_c_78_34
Type: TC
Location: 65153 - 66724 (-)
Type: TC
Location: 65153 - 66724 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides sp902491285
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.