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Cluster: Rep_499_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_499_c_11 Rep_499_c_11_11 15950 16867 + 2.A.115.1.5
sulfatase Rep_499_c_11 Rep_499_c_11_12 16914 17498 + S1_7
TC Rep_499_c_11 Rep_499_c_11_13 17529 18365 + 1.A.30.1.3
NULL(UNKNOWN) Rep_499_c_11 Rep_499_c_11_14 18405 18515 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_499_c_11 Rep_499_c_11_15 18512 19750 - GH154
CAZyme Rep_499_c_11 Rep_499_c_11_16 19759 20982 - GH88
CAZyme Rep_499_c_11 Rep_499_c_11_17 21265 23526 + GH95
TF Rep_499_c_11 Rep_499_c_11_18 23528 27550 - HTH_AraC
CAZyme Rep_499_c_11 Rep_499_c_11_19 27783 29165 - GH29
Gene ID: Rep_499_c_11_11
Type: TC
Location: 15950 - 16867 (+)
Gene ID: Rep_499_c_11_12
Type: sulfatase
Location: 16914 - 17498 (+)
Gene ID: Rep_499_c_11_13
Type: TC
Location: 17529 - 18365 (+)
Gene ID: Rep_499_c_11_14
Type:
Location: 18405 - 18515 (+)
Gene ID: Rep_499_c_11_15
Type: CAZyme
Location: 18512 - 19750 (-)
Gene ID: Rep_499_c_11_16
Type: CAZyme
Location: 19759 - 20982 (-)
Gene ID: Rep_499_c_11_17
Type: CAZyme
Location: 21265 - 23526 (+)
Gene ID: Rep_499_c_11_18
Type: TF
Location: 23528 - 27550 (-)
Gene ID: Rep_499_c_11_19
Type: CAZyme
Location: 27783 - 29165 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_499_c_11_19 vegan > omnivore 1.07184 0.01332

🧭 Explore Read Mapping of CGC

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