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Cluster: Rep_499_CGC45

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_499_c_64 Rep_499_c_64_6 4440 5804 - 1.B.17.3.5
TC Rep_499_c_64 Rep_499_c_64_7 5807 9007 - 2.A.6.2.22
TC Rep_499_c_64 Rep_499_c_64_8 9026 10171 - 2.A.6.2.19
TF Rep_499_c_64 Rep_499_c_64_9 10302 11174 + HTH_AraC
TC Rep_499_c_64 Rep_499_c_64_10 11182 12381 - 2.A.1.2.97
NULL(UNKNOWN) Rep_499_c_64 Rep_499_c_64_11 12498 12635 - NULL(UNKNOWN)
[View Structural Homologs]
pfam Rep_499_c_64 Rep_499_c_64_12 12913 14232 + OEP | OEP
TC Rep_499_c_64 Rep_499_c_64_13 14248 15282 + 2.A.1.3.36
NULL(UNKNOWN) Rep_499_c_64 Rep_499_c_64_14 15319 16899 + NULL(UNKNOWN)
[View Structural Homologs]
NULL(UNKNOWN) Rep_499_c_64 Rep_499_c_64_15 17024 18139 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_499_c_64 Rep_499_c_64_16 18161 19789 - GH20
CAZyme Rep_499_c_64 Rep_499_c_64_17 19811 22321 - GH20
pfam Rep_499_c_64 Rep_499_c_64_18 22360 23745 - DUF5016
TC Rep_499_c_64 Rep_499_c_64_19 23779 25254 - 8.A.46.1.2
TC Rep_499_c_64 Rep_499_c_64_20 25266 28508 - 1.B.14.6.1
Gene ID: Rep_499_c_64_6
Type: TC
Location: 4440 - 5804 (-)
Gene ID: Rep_499_c_64_7
Type: TC
Location: 5807 - 9007 (-)
Gene ID: Rep_499_c_64_8
Type: TC
Location: 9026 - 10171 (-)
Gene ID: Rep_499_c_64_9
Type: TF
Location: 10302 - 11174 (+)
Gene ID: Rep_499_c_64_10
Type: TC
Location: 11182 - 12381 (-)
Gene ID: Rep_499_c_64_11
Type:
Location: 12498 - 12635 (-)
Gene ID: Rep_499_c_64_12
Type: pfam
Location: 12913 - 14232 (+)
Gene ID: Rep_499_c_64_13
Type: TC
Location: 14248 - 15282 (+)
Gene ID: Rep_499_c_64_14
Type:
Location: 15319 - 16899 (+)
Gene ID: Rep_499_c_64_15
Type:
Location: 17024 - 18139 (-)
Gene ID: Rep_499_c_64_16
Type: CAZyme
Location: 18161 - 19789 (-)
Gene ID: Rep_499_c_64_17
Type: CAZyme
Location: 19811 - 22321 (-)
Gene ID: Rep_499_c_64_18
Type: pfam
Location: 22360 - 23745 (-)
Gene ID: Rep_499_c_64_19
Type: TC
Location: 23779 - 25254 (-)
Gene ID: Rep_499_c_64_20
Type: TC
Location: 25266 - 28508 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_499_c_64_15 vegan > omnivore 1.24086 0.01332
Rep_499_c_64_16 vegan > omnivore 1.22285 0.01332
Rep_499_c_64_16 vegetarian > omnivore 1.14855 0.03294
Rep_499_c_64_19 vegan > omnivore 1.08450 0.01332
Rep_499_c_64_20 vegan > omnivore 1.00979 0.01332

🧭 Explore Read Mapping of CGC

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