Cluster: Rep_499_CGC42
🧬 Cluster Details
- Gene Count: 17
- CAZyme Count: 6
- Substrate:
- Genome ID: Rep_499
- CGC Family ID: CGCFAM_00982
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_499_c_59 | Rep_499_c_59_15 | 19809 | 20609 | - | 9.B.116.3.2 |
| TC | Rep_499_c_59 | Rep_499_c_59_16 | 20973 | 24227 | + | 1.B.14.6.1 |
| pfam | Rep_499_c_59 | Rep_499_c_59_17 | 24249 | 26192 | + | SusD_RagB | SusD-like_3 |
| pfam | Rep_499_c_59 | Rep_499_c_59_18 | 26208 | 28028 | + | DUF5123 |
| CAZyme | Rep_499_c_59 | Rep_499_c_59_19 | 28052 | 29665 | + | PL1_2 |
| CAZyme | Rep_499_c_59 | Rep_499_c_59_20 | 29796 | 31343 | + | PL1_2 |
| CAZyme | Rep_499_c_59 | Rep_499_c_59_21 | 31352 | 32827 | + | PL1_2 |
| TF | Rep_499_c_59 | Rep_499_c_59_22 | 32894 | 37510 | - | HTH_AraC |
| NULL(UNKNOWN) | Rep_499_c_59 | Rep_499_c_59_23 | 37619 | 37951 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_499_c_59 | Rep_499_c_59_24 | 38122 | 39870 | - | CE12 | CE8 |
| CAZyme | Rep_499_c_59 | Rep_499_c_59_25 | 40230 | 41201 | - | CE8 |
| CAZyme | Rep_499_c_59 | Rep_499_c_59_26 | 41211 | 42410 | - | GH105 |
| TC | Rep_499_c_59 | Rep_499_c_59_27 | 42713 | 44119 | + | 4.A.5.1.4 |
| pfam | Rep_499_c_59 | Rep_499_c_59_28 | 44184 | 45104 | + | KduI |
| TC | Rep_499_c_59 | Rep_499_c_59_29 | 45409 | 46827 | + | 2.A.1.14.25 |
| pfam | Rep_499_c_59 | Rep_499_c_59_30 | 47224 | 50706 | - | DEAD | ResIII | AAA_11 | AAA_11 | AAA_12 | AAA_19 | AAA_30 |
| TC | Rep_499_c_59 | Rep_499_c_59_31 | 50681 | 51505 | - | 2.A.64.1.2 |
Gene ID: Rep_499_c_59_15
Type: TC
Location: 19809 - 20609 (-)
Type: TC
Location: 19809 - 20609 (-)
Gene ID: Rep_499_c_59_16
Type: TC
Location: 20973 - 24227 (+)
Type: TC
Location: 20973 - 24227 (+)
Gene ID: Rep_499_c_59_17
Type: pfam
Location: 24249 - 26192 (+)
Type: pfam
Location: 24249 - 26192 (+)
Gene ID: Rep_499_c_59_18
Type: pfam
Location: 26208 - 28028 (+)
Type: pfam
Location: 26208 - 28028 (+)
Gene ID: Rep_499_c_59_19
Type: CAZyme
Location: 28052 - 29665 (+)
Type: CAZyme
Location: 28052 - 29665 (+)
Gene ID: Rep_499_c_59_20
Type: CAZyme
Location: 29796 - 31343 (+)
Type: CAZyme
Location: 29796 - 31343 (+)
Gene ID: Rep_499_c_59_21
Type: CAZyme
Location: 31352 - 32827 (+)
Type: CAZyme
Location: 31352 - 32827 (+)
Gene ID: Rep_499_c_59_22
Type: TF
Location: 32894 - 37510 (-)
Type: TF
Location: 32894 - 37510 (-)
Gene ID: Rep_499_c_59_23
Type:
Location: 37619 - 37951 (-)
Type:
Location: 37619 - 37951 (-)
Gene ID: Rep_499_c_59_24
Type: CAZyme
Location: 38122 - 39870 (-)
Type: CAZyme
Location: 38122 - 39870 (-)
Gene ID: Rep_499_c_59_25
Type: CAZyme
Location: 40230 - 41201 (-)
Type: CAZyme
Location: 40230 - 41201 (-)
Gene ID: Rep_499_c_59_26
Type: CAZyme
Location: 41211 - 42410 (-)
Type: CAZyme
Location: 41211 - 42410 (-)
Gene ID: Rep_499_c_59_27
Type: TC
Location: 42713 - 44119 (+)
Type: TC
Location: 42713 - 44119 (+)
Gene ID: Rep_499_c_59_28
Type: pfam
Location: 44184 - 45104 (+)
Type: pfam
Location: 44184 - 45104 (+)
Gene ID: Rep_499_c_59_29
Type: TC
Location: 45409 - 46827 (+)
Type: TC
Location: 45409 - 46827 (+)
Gene ID: Rep_499_c_59_30
Type: pfam
Location: 47224 - 50706 (-)
Type: pfam
Location: 47224 - 50706 (-)
Gene ID: Rep_499_c_59_31
Type: TC
Location: 50681 - 51505 (-)
Type: TC
Location: 50681 - 51505 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides sp902491285
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.