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Cluster: Rep_499_CGC40

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_499_c_56 Rep_499_c_56_19 37443 39272 + 2.A.38.4.3
pfam Rep_499_c_56 Rep_499_c_56_20 39277 39963 + TrkA_N | F420_oxidored
CAZyme Rep_499_c_56 Rep_499_c_56_21 40081 42522 - GH2
CAZyme Rep_499_c_56 Rep_499_c_56_22 42594 43673 - GH53
pfam Rep_499_c_56 Rep_499_c_56_23 43685 45397 - SusE | DUF5111 | DUF5114
TC Rep_499_c_56 Rep_499_c_56_24 45421 46998 - 8.A.46.1.1
TC Rep_499_c_56 Rep_499_c_56_25 47021 49996 - 1.B.14.6.1
CAZyme Rep_499_c_56 Rep_499_c_56_26 50301 52907 - GH147
TF Rep_499_c_56 Rep_499_c_56_27 53083 56595 - HTH_AraC
pfam Rep_499_c_56 Rep_499_c_56_28 56710 57261 + DUF4738
CAZyme Rep_499_c_56 Rep_499_c_56_29 57385 58563 + PL13
Gene ID: Rep_499_c_56_19
Type: TC
Location: 37443 - 39272 (+)
Gene ID: Rep_499_c_56_20
Type: pfam
Location: 39277 - 39963 (+)
Gene ID: Rep_499_c_56_21
Type: CAZyme
Location: 40081 - 42522 (-)
Gene ID: Rep_499_c_56_22
Type: CAZyme
Location: 42594 - 43673 (-)
Gene ID: Rep_499_c_56_23
Type: pfam
Location: 43685 - 45397 (-)
Gene ID: Rep_499_c_56_24
Type: TC
Location: 45421 - 46998 (-)
Gene ID: Rep_499_c_56_25
Type: TC
Location: 47021 - 49996 (-)
Gene ID: Rep_499_c_56_26
Type: CAZyme
Location: 50301 - 52907 (-)
Gene ID: Rep_499_c_56_27
Type: TF
Location: 53083 - 56595 (-)
Gene ID: Rep_499_c_56_28
Type: pfam
Location: 56710 - 57261 (+)
Gene ID: Rep_499_c_56_29
Type: CAZyme
Location: 57385 - 58563 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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