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Cluster: Rep_499_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_499_c_10 Rep_499_c_10_12 10421 12919 - GH95
pfam Rep_499_c_10 Rep_499_c_10_13 13042 14649 - PEPCK_ATP
STP Rep_499_c_10 Rep_499_c_10_14 14931 15584 + Pribosyltran
TC Rep_499_c_10 Rep_499_c_10_15 15675 18197 - 9.B.144.1.4
pfam Rep_499_c_10 Rep_499_c_10_16 18272 19690 - AdoHcyase_NAD | 2-Hacid_dh_C | AdoHcyase | KARI_N
STP Rep_499_c_10 Rep_499_c_10_17 19876 20688 + HATPase_c | HisKA
TC Rep_499_c_10 Rep_499_c_10_18 20771 22459 - 9.B.174.1.2
Gene ID: Rep_499_c_10_12
Type: CAZyme
Location: 10421 - 12919 (-)
Gene ID: Rep_499_c_10_13
Type: pfam
Location: 13042 - 14649 (-)
Gene ID: Rep_499_c_10_14
Type: STP
Location: 14931 - 15584 (+)
Gene ID: Rep_499_c_10_15
Type: TC
Location: 15675 - 18197 (-)
Gene ID: Rep_499_c_10_16
Type: pfam
Location: 18272 - 19690 (-)
Gene ID: Rep_499_c_10_17
Type: STP
Location: 19876 - 20688 (+)
Gene ID: Rep_499_c_10_18
Type: TC
Location: 20771 - 22459 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_499_c_10_17 vegan > omnivore 1.01172 0.01332

🧭 Explore Read Mapping of CGC

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