Cluster: Rep_499_CGC23
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_499
- CGC Family ID: CGCFAM_06412
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_499_c_27 | Rep_499_c_27_25 | 33834 | 35966 | + | 2.A.37.2.5 |
| CAZyme | Rep_499_c_27 | Rep_499_c_27_26 | 36079 | 37344 | - | CE17 |
| CAZyme | Rep_499_c_27 | Rep_499_c_27_27 | 37356 | 39116 | - | GH3 |
| TF | Rep_499_c_27 | Rep_499_c_27_28 | 39334 | 43410 | + | HTH_AraC |
| pfam | Rep_499_c_27 | Rep_499_c_27_29 | 43485 | 45200 | - | SusD_RagB | SusD-like_3 |
| TC | Rep_499_c_27 | Rep_499_c_27_30 | 45217 | 48378 | - | 1.B.14.6.1 |
Gene ID: Rep_499_c_27_25
Type: TC
Location: 33834 - 35966 (+)
Type: TC
Location: 33834 - 35966 (+)
Gene ID: Rep_499_c_27_26
Type: CAZyme
Location: 36079 - 37344 (-)
Type: CAZyme
Location: 36079 - 37344 (-)
Gene ID: Rep_499_c_27_27
Type: CAZyme
Location: 37356 - 39116 (-)
Type: CAZyme
Location: 37356 - 39116 (-)
Gene ID: Rep_499_c_27_28
Type: TF
Location: 39334 - 43410 (+)
Type: TF
Location: 39334 - 43410 (+)
Gene ID: Rep_499_c_27_29
Type: pfam
Location: 43485 - 45200 (-)
Type: pfam
Location: 43485 - 45200 (-)
Gene ID: Rep_499_c_27_30
Type: TC
Location: 45217 - 48378 (-)
Type: TC
Location: 45217 - 48378 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides sp902491285
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_499_c_27_26 | vegan > omnivore | 1.17792 | 0.01332 |
| Rep_499_c_27_28 | vegan > omnivore | 1.50432 | 0.01332 |
| Rep_499_c_27_29 | vegan > omnivore | 1.69146 | 0.01332 |
| Rep_499_c_27_30 | vegan > omnivore | 1.11702 | 0.01332 |