Cluster: Rep_499_CGC21
🧬 Cluster Details
- Gene Count: 25
- CAZyme Count: 14
- Substrate: arabinogalactan/pectin
- Genome ID: Rep_499
- CGC Family ID: CGCFAM_00212
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_499_c_23 | Rep_499_c_23_1 | 2 | 2791 | + | 1.B.14.6.13 |
| TC | Rep_499_c_23 | Rep_499_c_23_2 | 2809 | 4359 | + | 8.A.46.2.1 |
| CAZyme | Rep_499_c_23 | Rep_499_c_23_3 | 4388 | 5521 | + | GH18 |
| pfam | Rep_499_c_23 | Rep_499_c_23_4 | 5531 | 6721 | + | BT_3987-like_N | Laminin_G_3 |
| pfam | Rep_499_c_23 | Rep_499_c_23_5 | 6745 | 7692 | + | F5_F8_type_C | DUF4999 | F5_F8_type_C_2 |
| CAZyme | Rep_499_c_23 | Rep_499_c_23_6 | 7960 | 10164 | + | GH163 |
| pfam | Rep_499_c_23 | Rep_499_c_23_7 | 10262 | 11593 | + | MFS_1 |
| CAZyme | Rep_499_c_23 | Rep_499_c_23_8 | 11611 | 12579 | + | GH130_2 |
| CAZyme | Rep_499_c_23 | Rep_499_c_23_9 | 12587 | 14851 | + | GH92 |
| NULL(UNKNOWN) | Rep_499_c_23 | Rep_499_c_23_10 | 14973 | 15092 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | Rep_499_c_23 | Rep_499_c_23_11 | 15152 | 16039 | + | AP_endonuc_2 |
| TC | Rep_499_c_23 | Rep_499_c_23_12 | 16934 | 20374 | + | 1.B.14.6.1 |
| pfam | Rep_499_c_23 | Rep_499_c_23_13 | 20398 | 22365 | + | SusD_RagB | SusD-like_3 |
| CAZyme | Rep_499_c_23 | Rep_499_c_23_14 | 22485 | 24386 | + | PL1_2 |
| pfam | Rep_499_c_23 | Rep_499_c_23_15 | 24397 | 25065 | + | DUF3826 |
| CAZyme | Rep_499_c_23 | Rep_499_c_23_16 | 25245 | 26174 | + | GH43_18 |
| CAZyme | Rep_499_c_23 | Rep_499_c_23_17 | 26195 | 29515 | + | GH142 | GH143 |
| CAZyme | Rep_499_c_23 | Rep_499_c_23_18 | 29636 | 32485 | + | CBM67 | GH78 |
| CAZyme | Rep_499_c_23 | Rep_499_c_23_19 | 32571 | 33908 | + | GH28 |
| CAZyme | Rep_499_c_23 | Rep_499_c_23_20 | 33932 | 35899 | + | CE19 |
| NULL(UNKNOWN) | Rep_499_c_23 | Rep_499_c_23_21 | 36206 | 36352 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_499_c_23 | Rep_499_c_23_22 | 36533 | 40399 | - | CBM67 | GH33 | GH78 |
| CAZyme | Rep_499_c_23 | Rep_499_c_23_23 | 40405 | 41862 | - | GH140 |
| CAZyme | Rep_499_c_23 | Rep_499_c_23_24 | 41919 | 43121 | - | GH105 |
| CAZyme | Rep_499_c_23 | Rep_499_c_23_25 | 43135 | 45603 | - | GH95 |
Gene ID: Rep_499_c_23_1
Type: TC
Location: 2 - 2791 (+)
Type: TC
Location: 2 - 2791 (+)
Gene ID: Rep_499_c_23_2
Type: TC
Location: 2809 - 4359 (+)
Type: TC
Location: 2809 - 4359 (+)
Gene ID: Rep_499_c_23_3
Type: CAZyme
Location: 4388 - 5521 (+)
Type: CAZyme
Location: 4388 - 5521 (+)
Gene ID: Rep_499_c_23_4
Type: pfam
Location: 5531 - 6721 (+)
Type: pfam
Location: 5531 - 6721 (+)
Gene ID: Rep_499_c_23_5
Type: pfam
Location: 6745 - 7692 (+)
Type: pfam
Location: 6745 - 7692 (+)
Gene ID: Rep_499_c_23_6
Type: CAZyme
Location: 7960 - 10164 (+)
Type: CAZyme
Location: 7960 - 10164 (+)
Gene ID: Rep_499_c_23_7
Type: pfam
Location: 10262 - 11593 (+)
Type: pfam
Location: 10262 - 11593 (+)
Gene ID: Rep_499_c_23_8
Type: CAZyme
Location: 11611 - 12579 (+)
Type: CAZyme
Location: 11611 - 12579 (+)
Gene ID: Rep_499_c_23_9
Type: CAZyme
Location: 12587 - 14851 (+)
Type: CAZyme
Location: 12587 - 14851 (+)
Gene ID: Rep_499_c_23_10
Type:
Location: 14973 - 15092 (+)
Type:
Location: 14973 - 15092 (+)
Gene ID: Rep_499_c_23_11
Type: pfam
Location: 15152 - 16039 (+)
Type: pfam
Location: 15152 - 16039 (+)
Gene ID: Rep_499_c_23_12
Type: TC
Location: 16934 - 20374 (+)
Type: TC
Location: 16934 - 20374 (+)
Gene ID: Rep_499_c_23_13
Type: pfam
Location: 20398 - 22365 (+)
Type: pfam
Location: 20398 - 22365 (+)
Gene ID: Rep_499_c_23_14
Type: CAZyme
Location: 22485 - 24386 (+)
Type: CAZyme
Location: 22485 - 24386 (+)
Gene ID: Rep_499_c_23_15
Type: pfam
Location: 24397 - 25065 (+)
Type: pfam
Location: 24397 - 25065 (+)
Gene ID: Rep_499_c_23_16
Type: CAZyme
Location: 25245 - 26174 (+)
Type: CAZyme
Location: 25245 - 26174 (+)
Gene ID: Rep_499_c_23_17
Type: CAZyme
Location: 26195 - 29515 (+)
Type: CAZyme
Location: 26195 - 29515 (+)
Gene ID: Rep_499_c_23_18
Type: CAZyme
Location: 29636 - 32485 (+)
Type: CAZyme
Location: 29636 - 32485 (+)
Gene ID: Rep_499_c_23_19
Type: CAZyme
Location: 32571 - 33908 (+)
Type: CAZyme
Location: 32571 - 33908 (+)
Gene ID: Rep_499_c_23_20
Type: CAZyme
Location: 33932 - 35899 (+)
Type: CAZyme
Location: 33932 - 35899 (+)
Gene ID: Rep_499_c_23_21
Type:
Location: 36206 - 36352 (-)
Type:
Location: 36206 - 36352 (-)
Gene ID: Rep_499_c_23_22
Type: CAZyme
Location: 36533 - 40399 (-)
Type: CAZyme
Location: 36533 - 40399 (-)
Gene ID: Rep_499_c_23_23
Type: CAZyme
Location: 40405 - 41862 (-)
Type: CAZyme
Location: 40405 - 41862 (-)
Gene ID: Rep_499_c_23_24
Type: CAZyme
Location: 41919 - 43121 (-)
Type: CAZyme
Location: 41919 - 43121 (-)
Gene ID: Rep_499_c_23_25
Type: CAZyme
Location: 43135 - 45603 (-)
Type: CAZyme
Location: 43135 - 45603 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides sp902491285
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_499_c_23_4 | vegan > omnivore | 1.06712 | 0.01332 |