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Cluster: Rep_499_CGC18

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_499_c_18 Rep_499_c_18_16 20547 22985 - PL30
pfam Rep_499_c_18 Rep_499_c_18_17 22991 23920 - DUF5017
TC Rep_499_c_18 Rep_499_c_18_18 23938 25560 - 8.A.46.1.3
TC Rep_499_c_18 Rep_499_c_18_19 25584 28748 - 1.B.14.6.1
CAZyme Rep_499_c_18 Rep_499_c_18_20 28812 30206 - GH88
TF Rep_499_c_18 Rep_499_c_18_21 30283 34272 + HTH_AraC
CAZyme Rep_499_c_18 Rep_499_c_18_22 34378 35514 + GH117 | GH117
CAZyme Rep_499_c_18 Rep_499_c_18_23 35560 37587 + PL8
Gene ID: Rep_499_c_18_16
Type: CAZyme
Location: 20547 - 22985 (-)
Gene ID: Rep_499_c_18_17
Type: pfam
Location: 22991 - 23920 (-)
Gene ID: Rep_499_c_18_18
Type: TC
Location: 23938 - 25560 (-)
Gene ID: Rep_499_c_18_19
Type: TC
Location: 25584 - 28748 (-)
Gene ID: Rep_499_c_18_20
Type: CAZyme
Location: 28812 - 30206 (-)
Gene ID: Rep_499_c_18_21
Type: TF
Location: 30283 - 34272 (+)
Gene ID: Rep_499_c_18_22
Type: CAZyme
Location: 34378 - 35514 (+)
Gene ID: Rep_499_c_18_23
Type: CAZyme
Location: 35560 - 37587 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_499_c_18_23 vegan > omnivore 1.22964 0.01332

🧭 Explore Read Mapping of CGC

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