Cluster: Rep_499_CGC15
🧬 Cluster Details
- Gene Count: 16
- CAZyme Count: 5
- Substrate: pectin/alpha-glucan
- Genome ID: Rep_499
- CGC Family ID: CGCFAM_00025
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_499_c_17 | Rep_499_c_17_31 | 29302 | 31155 | + | GH13_46 |
| CAZyme | Rep_499_c_17 | Rep_499_c_17_32 | 31354 | 33564 | + | GH97 |
| TC | Rep_499_c_17 | Rep_499_c_17_33 | 33653 | 36676 | + | 1.B.14.6.1 |
| TC | Rep_499_c_17 | Rep_499_c_17_34 | 36697 | 38295 | + | 8.A.46.1.1 |
| pfam | Rep_499_c_17 | Rep_499_c_17_35 | 38334 | 39482 | + | SusE | SusF_SusE |
| NULL(UNKNOWN) | Rep_499_c_17 | Rep_499_c_17_36 | 39506 | 40870 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_499_c_17 | Rep_499_c_17_37 | 40909 | 43269 | + | GH13_10 |
| NULL(UNKNOWN) | Rep_499_c_17 | Rep_499_c_17_38 | 43578 | 44342 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | Rep_499_c_17 | Rep_499_c_17_39 | 44395 | 44706 | - | FeS_assembly_P |
| CAZyme | Rep_499_c_17 | Rep_499_c_17_40 | 44867 | 47506 | - | GH2 |
| pfam | Rep_499_c_17 | Rep_499_c_17_41 | 47549 | 48244 | - | RadC | UPF0758_N |
| CAZyme | Rep_499_c_17 | Rep_499_c_17_42 | 48341 | 49330 | - | GT2 |
| pfam | Rep_499_c_17 | Rep_499_c_17_43 | 49468 | 50667 | - | Acetate_kinase |
| pfam | Rep_499_c_17 | Rep_499_c_17_44 | 50707 | 51726 | - | PTA_PTB |
| TC | Rep_499_c_17 | Rep_499_c_17_45 | 51924 | 52367 | + | 1.E.14.1.13 |
| TC | Rep_499_c_17 | Rep_499_c_17_46 | 52364 | 53059 | + | 2.A.122.1.1 |
Gene ID: Rep_499_c_17_31
Type: CAZyme
Location: 29302 - 31155 (+)
Type: CAZyme
Location: 29302 - 31155 (+)
Gene ID: Rep_499_c_17_32
Type: CAZyme
Location: 31354 - 33564 (+)
Type: CAZyme
Location: 31354 - 33564 (+)
Gene ID: Rep_499_c_17_33
Type: TC
Location: 33653 - 36676 (+)
Type: TC
Location: 33653 - 36676 (+)
Gene ID: Rep_499_c_17_34
Type: TC
Location: 36697 - 38295 (+)
Type: TC
Location: 36697 - 38295 (+)
Gene ID: Rep_499_c_17_35
Type: pfam
Location: 38334 - 39482 (+)
Type: pfam
Location: 38334 - 39482 (+)
Gene ID: Rep_499_c_17_36
Type:
Location: 39506 - 40870 (+)
Type:
Location: 39506 - 40870 (+)
Gene ID: Rep_499_c_17_37
Type: CAZyme
Location: 40909 - 43269 (+)
Type: CAZyme
Location: 40909 - 43269 (+)
Gene ID: Rep_499_c_17_38
Type:
Location: 43578 - 44342 (-)
Type:
Location: 43578 - 44342 (-)
Gene ID: Rep_499_c_17_39
Type: pfam
Location: 44395 - 44706 (-)
Type: pfam
Location: 44395 - 44706 (-)
Gene ID: Rep_499_c_17_40
Type: CAZyme
Location: 44867 - 47506 (-)
Type: CAZyme
Location: 44867 - 47506 (-)
Gene ID: Rep_499_c_17_41
Type: pfam
Location: 47549 - 48244 (-)
Type: pfam
Location: 47549 - 48244 (-)
Gene ID: Rep_499_c_17_42
Type: CAZyme
Location: 48341 - 49330 (-)
Type: CAZyme
Location: 48341 - 49330 (-)
Gene ID: Rep_499_c_17_43
Type: pfam
Location: 49468 - 50667 (-)
Type: pfam
Location: 49468 - 50667 (-)
Gene ID: Rep_499_c_17_44
Type: pfam
Location: 50707 - 51726 (-)
Type: pfam
Location: 50707 - 51726 (-)
Gene ID: Rep_499_c_17_45
Type: TC
Location: 51924 - 52367 (+)
Type: TC
Location: 51924 - 52367 (+)
Gene ID: Rep_499_c_17_46
Type: TC
Location: 52364 - 53059 (+)
Type: TC
Location: 52364 - 53059 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides sp902491285
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.