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Cluster: Rep_490_CGC96

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_490_c_3 Rep_490_c_3_54 94654 97305 + 3.A.3.4.1
pfam Rep_490_c_3 Rep_490_c_3_55 97469 98983 + Redoxin | Thioredoxin_8
CAZyme Rep_490_c_3 Rep_490_c_3_56 99107 102424 + GH106
CAZyme Rep_490_c_3 Rep_490_c_3_57 102427 103860 + CE20
CAZyme Rep_490_c_3 Rep_490_c_3_58 103870 106281 + GH139
CAZyme Rep_490_c_3 Rep_490_c_3_59 106310 108958 + GH2
NULL(UNKNOWN) Rep_490_c_3 Rep_490_c_3_60 109167 109340 + NULL(UNKNOWN)
[View Structural Homologs]
TF Rep_490_c_3 Rep_490_c_3_61 109676 114094 + HTH_AraC
CAZyme Rep_490_c_3 Rep_490_c_3_62 114158 115840 + PL1_2
CAZyme Rep_490_c_3 Rep_490_c_3_63 115908 119003 + PL29
Gene ID: Rep_490_c_3_54
Type: TC
Location: 94654 - 97305 (+)
Gene ID: Rep_490_c_3_55
Type: pfam
Location: 97469 - 98983 (+)
Gene ID: Rep_490_c_3_56
Type: CAZyme
Location: 99107 - 102424 (+)
Gene ID: Rep_490_c_3_57
Type: CAZyme
Location: 102427 - 103860 (+)
Gene ID: Rep_490_c_3_58
Type: CAZyme
Location: 103870 - 106281 (+)
Gene ID: Rep_490_c_3_59
Type: CAZyme
Location: 106310 - 108958 (+)
Gene ID: Rep_490_c_3_60
Type:
Location: 109167 - 109340 (+)
Gene ID: Rep_490_c_3_61
Type: TF
Location: 109676 - 114094 (+)
Gene ID: Rep_490_c_3_62
Type: CAZyme
Location: 114158 - 115840 (+)
Gene ID: Rep_490_c_3_63
Type: CAZyme
Location: 115908 - 119003 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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