Cluster: Rep_490_CGC94
🧬 Cluster Details
- Gene Count: 30
- CAZyme Count: 14
- Substrate: arabinogalactan/pectin
- Genome ID: Rep_490
- CGC Family ID: CGCFAM_00212
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_490_c_3 | Rep_490_c_3_1 | 2 | 2758 | + | 1.B.14.6.13 |
| TC | Rep_490_c_3 | Rep_490_c_3_2 | 2767 | 3408 | + | 8.A.46.2.1 |
| TC | Rep_490_c_3 | Rep_490_c_3_3 | 3464 | 4351 | + | 8.A.46.2.1 |
| CAZyme | Rep_490_c_3 | Rep_490_c_3_4 | 4378 | 5400 | + | GH18 |
| pfam | Rep_490_c_3 | Rep_490_c_3_5 | 5417 | 6631 | + | BT_3987-like_N | Laminin_G_3 |
| pfam | Rep_490_c_3 | Rep_490_c_3_6 | 6648 | 7997 | + | BT_3987-like_N | BT_3987-like_N | DUF4999 |
| CAZyme | Rep_490_c_3 | Rep_490_c_3_7 | 8164 | 10368 | + | GH163 |
| pfam | Rep_490_c_3 | Rep_490_c_3_8 | 10467 | 11798 | + | MFS_1 | MFS_1 |
| CAZyme | Rep_490_c_3 | Rep_490_c_3_9 | 11851 | 12819 | + | GH130_2 |
| CAZyme | Rep_490_c_3 | Rep_490_c_3_10 | 12854 | 15097 | + | GH92 |
| pfam | Rep_490_c_3 | Rep_490_c_3_11 | 15397 | 16290 | + | AP_endonuc_2 |
| pfam | Rep_490_c_3 | Rep_490_c_3_12 | 16818 | 18293 | + | DUF4957 | DUF4992 | DUF5123 |
| TC | Rep_490_c_3 | Rep_490_c_3_13 | 18323 | 21631 | + | 1.B.14.6.2 |
| pfam | Rep_490_c_3 | Rep_490_c_3_14 | 21646 | 23859 | + | SusD_RagB | SusD-like_3 |
| pfam | Rep_490_c_3 | Rep_490_c_3_15 | 24508 | 25953 | + | DUF4957 | DUF4992 | DUF5123 |
| TC | Rep_490_c_3 | Rep_490_c_3_16 | 25986 | 29294 | + | 1.B.14.6.1 |
| pfam | Rep_490_c_3 | Rep_490_c_3_17 | 29311 | 31578 | + | SusD_RagB | SusD-like_3 |
| CAZyme | Rep_490_c_3 | Rep_490_c_3_18 | 31805 | 33544 | + | PL1_2 |
| pfam | Rep_490_c_3 | Rep_490_c_3_19 | 33618 | 34286 | + | DUF3826 |
| CAZyme | Rep_490_c_3 | Rep_490_c_3_20 | 34530 | 35459 | + | GH43_18 |
| CAZyme | Rep_490_c_3 | Rep_490_c_3_21 | 35511 | 38840 | + | GH142 | GH143 |
| CAZyme | Rep_490_c_3 | Rep_490_c_3_22 | 38873 | 41734 | + | CBM67 | GH78 |
| CAZyme | Rep_490_c_3 | Rep_490_c_3_23 | 41771 | 43108 | + | GH28 |
| CAZyme | Rep_490_c_3 | Rep_490_c_3_24 | 43146 | 45107 | + | CE19 |
| pfam | Rep_490_c_3 | Rep_490_c_3_25 | 45277 | 46059 | + | Patatin |
| sulfatase | Rep_490_c_3 | Rep_490_c_3_26 | 46047 | 46934 | - | S1_6 |
| CAZyme | Rep_490_c_3 | Rep_490_c_3_27 | 47110 | 50982 | - | CBM67 | GH33 | GH78 |
| CAZyme | Rep_490_c_3 | Rep_490_c_3_28 | 50975 | 52426 | - | GH140 |
| CAZyme | Rep_490_c_3 | Rep_490_c_3_29 | 52463 | 53665 | - | GH105 |
| CAZyme | Rep_490_c_3 | Rep_490_c_3_30 | 53679 | 56147 | - | GH95 |
Gene ID: Rep_490_c_3_1
Type: TC
Location: 2 - 2758 (+)
Type: TC
Location: 2 - 2758 (+)
Gene ID: Rep_490_c_3_2
Type: TC
Location: 2767 - 3408 (+)
Type: TC
Location: 2767 - 3408 (+)
Gene ID: Rep_490_c_3_3
Type: TC
Location: 3464 - 4351 (+)
Type: TC
Location: 3464 - 4351 (+)
Gene ID: Rep_490_c_3_4
Type: CAZyme
Location: 4378 - 5400 (+)
Type: CAZyme
Location: 4378 - 5400 (+)
Gene ID: Rep_490_c_3_5
Type: pfam
Location: 5417 - 6631 (+)
Type: pfam
Location: 5417 - 6631 (+)
Gene ID: Rep_490_c_3_6
Type: pfam
Location: 6648 - 7997 (+)
Type: pfam
Location: 6648 - 7997 (+)
Gene ID: Rep_490_c_3_7
Type: CAZyme
Location: 8164 - 10368 (+)
Type: CAZyme
Location: 8164 - 10368 (+)
Gene ID: Rep_490_c_3_8
Type: pfam
Location: 10467 - 11798 (+)
Type: pfam
Location: 10467 - 11798 (+)
Gene ID: Rep_490_c_3_9
Type: CAZyme
Location: 11851 - 12819 (+)
Type: CAZyme
Location: 11851 - 12819 (+)
Gene ID: Rep_490_c_3_10
Type: CAZyme
Location: 12854 - 15097 (+)
Type: CAZyme
Location: 12854 - 15097 (+)
Gene ID: Rep_490_c_3_11
Type: pfam
Location: 15397 - 16290 (+)
Type: pfam
Location: 15397 - 16290 (+)
Gene ID: Rep_490_c_3_12
Type: pfam
Location: 16818 - 18293 (+)
Type: pfam
Location: 16818 - 18293 (+)
Gene ID: Rep_490_c_3_13
Type: TC
Location: 18323 - 21631 (+)
Type: TC
Location: 18323 - 21631 (+)
Gene ID: Rep_490_c_3_14
Type: pfam
Location: 21646 - 23859 (+)
Type: pfam
Location: 21646 - 23859 (+)
Gene ID: Rep_490_c_3_15
Type: pfam
Location: 24508 - 25953 (+)
Type: pfam
Location: 24508 - 25953 (+)
Gene ID: Rep_490_c_3_16
Type: TC
Location: 25986 - 29294 (+)
Type: TC
Location: 25986 - 29294 (+)
Gene ID: Rep_490_c_3_17
Type: pfam
Location: 29311 - 31578 (+)
Type: pfam
Location: 29311 - 31578 (+)
Gene ID: Rep_490_c_3_18
Type: CAZyme
Location: 31805 - 33544 (+)
Type: CAZyme
Location: 31805 - 33544 (+)
Gene ID: Rep_490_c_3_19
Type: pfam
Location: 33618 - 34286 (+)
Type: pfam
Location: 33618 - 34286 (+)
Gene ID: Rep_490_c_3_20
Type: CAZyme
Location: 34530 - 35459 (+)
Type: CAZyme
Location: 34530 - 35459 (+)
Gene ID: Rep_490_c_3_21
Type: CAZyme
Location: 35511 - 38840 (+)
Type: CAZyme
Location: 35511 - 38840 (+)
Gene ID: Rep_490_c_3_22
Type: CAZyme
Location: 38873 - 41734 (+)
Type: CAZyme
Location: 38873 - 41734 (+)
Gene ID: Rep_490_c_3_23
Type: CAZyme
Location: 41771 - 43108 (+)
Type: CAZyme
Location: 41771 - 43108 (+)
Gene ID: Rep_490_c_3_24
Type: CAZyme
Location: 43146 - 45107 (+)
Type: CAZyme
Location: 43146 - 45107 (+)
Gene ID: Rep_490_c_3_25
Type: pfam
Location: 45277 - 46059 (+)
Type: pfam
Location: 45277 - 46059 (+)
Gene ID: Rep_490_c_3_26
Type: sulfatase
Location: 46047 - 46934 (-)
Type: sulfatase
Location: 46047 - 46934 (-)
Gene ID: Rep_490_c_3_27
Type: CAZyme
Location: 47110 - 50982 (-)
Type: CAZyme
Location: 47110 - 50982 (-)
Gene ID: Rep_490_c_3_28
Type: CAZyme
Location: 50975 - 52426 (-)
Type: CAZyme
Location: 50975 - 52426 (-)
Gene ID: Rep_490_c_3_29
Type: CAZyme
Location: 52463 - 53665 (-)
Type: CAZyme
Location: 52463 - 53665 (-)
Gene ID: Rep_490_c_3_30
Type: CAZyme
Location: 53679 - 56147 (-)
Type: CAZyme
Location: 53679 - 56147 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides thetaiotaomicron
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.