Cluster: Rep_490_CGC9
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 6
- Substrate:
- Genome ID: Rep_490
- CGC Family ID: CGCFAM_02823
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_490_c_2 | Rep_490_c_2_454 | 550484 | 552490 | - | 8.A.46.2.1 |
| TC | Rep_490_c_2 | Rep_490_c_2_455 | 552502 | 555807 | - | 1.B.14.6.2 |
| pfam | Rep_490_c_2 | Rep_490_c_2_456 | 555844 | 557580 | - | DUF5010 | CBM_35_2 |
| CAZyme | Rep_490_c_2 | Rep_490_c_2_457 | 558378 | 562073 | + | GH2 |
| CAZyme | Rep_490_c_2 | Rep_490_c_2_458 | 562706 | 565765 | - | GH95 |
| CAZyme | Rep_490_c_2 | Rep_490_c_2_459 | 565980 | 568133 | - | GH3 |
| NULL(UNKNOWN) | Rep_490_c_2 | Rep_490_c_2_460 | 568155 | 568541 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_490_c_2 | Rep_490_c_2_461 | 568592 | 570310 | - | CE20 | CE20 |
| CAZyme | Rep_490_c_2 | Rep_490_c_2_462 | 570341 | 573205 | - | GH3 |
| CAZyme | Rep_490_c_2 | Rep_490_c_2_463 | 573272 | 575365 | - | GH43_2 | GH43_2 |
| pfam | Rep_490_c_2 | Rep_490_c_2_464 | 575603 | 576448 | - | Patatin | DUF6363 |
| TC | Rep_490_c_2 | Rep_490_c_2_465 | 576426 | 578651 | - | 2.A.37.4.2 |
Gene ID: Rep_490_c_2_454
Type: TC
Location: 550484 - 552490 (-)
Type: TC
Location: 550484 - 552490 (-)
Gene ID: Rep_490_c_2_455
Type: TC
Location: 552502 - 555807 (-)
Type: TC
Location: 552502 - 555807 (-)
Gene ID: Rep_490_c_2_456
Type: pfam
Location: 555844 - 557580 (-)
Type: pfam
Location: 555844 - 557580 (-)
Gene ID: Rep_490_c_2_457
Type: CAZyme
Location: 558378 - 562073 (+)
Type: CAZyme
Location: 558378 - 562073 (+)
Gene ID: Rep_490_c_2_458
Type: CAZyme
Location: 562706 - 565765 (-)
Type: CAZyme
Location: 562706 - 565765 (-)
Gene ID: Rep_490_c_2_459
Type: CAZyme
Location: 565980 - 568133 (-)
Type: CAZyme
Location: 565980 - 568133 (-)
Gene ID: Rep_490_c_2_460
Type:
Location: 568155 - 568541 (-)
Type:
Location: 568155 - 568541 (-)
Gene ID: Rep_490_c_2_461
Type: CAZyme
Location: 568592 - 570310 (-)
Type: CAZyme
Location: 568592 - 570310 (-)
Gene ID: Rep_490_c_2_462
Type: CAZyme
Location: 570341 - 573205 (-)
Type: CAZyme
Location: 570341 - 573205 (-)
Gene ID: Rep_490_c_2_463
Type: CAZyme
Location: 573272 - 575365 (-)
Type: CAZyme
Location: 573272 - 575365 (-)
Gene ID: Rep_490_c_2_464
Type: pfam
Location: 575603 - 576448 (-)
Type: pfam
Location: 575603 - 576448 (-)
Gene ID: Rep_490_c_2_465
Type: TC
Location: 576426 - 578651 (-)
Type: TC
Location: 576426 - 578651 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides thetaiotaomicron
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.