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Cluster: Rep_490_CGC89

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_490_c_2 Rep_490_c_2_3770 4980299 4983523 - 1.B.14.6.2
pfam Rep_490_c_2 Rep_490_c_2_3771 4983578 4984741 - GlcNAc_2-epim
CAZyme Rep_490_c_2 Rep_490_c_2_3772 4985472 4987106 + CBM93 | GH33
CAZyme Rep_490_c_2 Rep_490_c_2_3773 4987103 4989115 + GH20
CAZyme Rep_490_c_2 Rep_490_c_2_3774 4989127 4991205 + CE20
CAZyme Rep_490_c_2 Rep_490_c_2_3775 4991283 4993877 + GH2
CAZyme Rep_490_c_2 Rep_490_c_2_3776 4993916 4996240 + GH20
CAZyme Rep_490_c_2 Rep_490_c_2_3777 4996240 4998315 + GH20
CAZyme Rep_490_c_2 Rep_490_c_2_3778 4998331 5000850 + GH2
Gene ID: Rep_490_c_2_3770
Type: TC
Location: 4980299 - 4983523 (-)
Gene ID: Rep_490_c_2_3771
Type: pfam
Location: 4983578 - 4984741 (-)
Gene ID: Rep_490_c_2_3772
Type: CAZyme
Location: 4985472 - 4987106 (+)
Gene ID: Rep_490_c_2_3773
Type: CAZyme
Location: 4987103 - 4989115 (+)
Gene ID: Rep_490_c_2_3774
Type: CAZyme
Location: 4989127 - 4991205 (+)
Gene ID: Rep_490_c_2_3775
Type: CAZyme
Location: 4991283 - 4993877 (+)
Gene ID: Rep_490_c_2_3776
Type: CAZyme
Location: 4993916 - 4996240 (+)
Gene ID: Rep_490_c_2_3777
Type: CAZyme
Location: 4996240 - 4998315 (+)
Gene ID: Rep_490_c_2_3778
Type: CAZyme
Location: 4998331 - 5000850 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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