Cluster: Rep_490_CGC86
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 4
- Substrate:
- Genome ID: Rep_490
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_490_c_2 | Rep_490_c_2_3668 | 4850239 | 4851933 | - | 2.A.21.3.19 |
| sulfatase | Rep_490_c_2 | Rep_490_c_2_3669 | 4851959 | 4853098 | - | S1_22 |
| CAZyme | Rep_490_c_2 | Rep_490_c_2_3670 | 4853614 | 4855539 | - | GH43_4 |
| pfam | Rep_490_c_2 | Rep_490_c_2_3671 | 4855574 | 4857379 | - | SusD_RagB | SusD-like_3 |
| TC | Rep_490_c_2 | Rep_490_c_2_3672 | 4857405 | 4860554 | - | 1.B.14.6.1 |
| pfam | Rep_490_c_2 | Rep_490_c_2_3673 | 4860559 | 4862334 | - | SusD_RagB | SusD-like_3 |
| TC | Rep_490_c_2 | Rep_490_c_2_3674 | 4862347 | 4865430 | - | 1.B.14.6.1 |
| pfam | Rep_490_c_2 | Rep_490_c_2_3675 | 4865450 | 4867759 | - | Laminin_G_3 | Laminin_G_3 | Laminin_G_3 |
| TF | Rep_490_c_2 | Rep_490_c_2_3676 | 4867989 | 4872251 | - | HTH_AraC |
| CAZyme | Rep_490_c_2 | Rep_490_c_2_3677 | 4872407 | 4873948 | + | GH43_4 |
| CAZyme | Rep_490_c_2 | Rep_490_c_2_3678 | 4873974 | 4875956 | + | GH51_2 |
| CAZyme | Rep_490_c_2 | Rep_490_c_2_3679 | 4875979 | 4876923 | + | GH43_29 |
| pfam | Rep_490_c_2 | Rep_490_c_2_3680 | 4877043 | 4878197 | - | GHMP_kinases_N | GHMP_kinases_C | GalKase_gal_bdg |
| TC | Rep_490_c_2 | Rep_490_c_2_3681 | 4878241 | 4879551 | - | 2.A.1.7.2 |
Gene ID: Rep_490_c_2_3668
Type: TC
Location: 4850239 - 4851933 (-)
Type: TC
Location: 4850239 - 4851933 (-)
Gene ID: Rep_490_c_2_3669
Type: sulfatase
Location: 4851959 - 4853098 (-)
Type: sulfatase
Location: 4851959 - 4853098 (-)
Gene ID: Rep_490_c_2_3670
Type: CAZyme
Location: 4853614 - 4855539 (-)
Type: CAZyme
Location: 4853614 - 4855539 (-)
Gene ID: Rep_490_c_2_3671
Type: pfam
Location: 4855574 - 4857379 (-)
Type: pfam
Location: 4855574 - 4857379 (-)
Gene ID: Rep_490_c_2_3672
Type: TC
Location: 4857405 - 4860554 (-)
Type: TC
Location: 4857405 - 4860554 (-)
Gene ID: Rep_490_c_2_3673
Type: pfam
Location: 4860559 - 4862334 (-)
Type: pfam
Location: 4860559 - 4862334 (-)
Gene ID: Rep_490_c_2_3674
Type: TC
Location: 4862347 - 4865430 (-)
Type: TC
Location: 4862347 - 4865430 (-)
Gene ID: Rep_490_c_2_3675
Type: pfam
Location: 4865450 - 4867759 (-)
Type: pfam
Location: 4865450 - 4867759 (-)
Gene ID: Rep_490_c_2_3676
Type: TF
Location: 4867989 - 4872251 (-)
Type: TF
Location: 4867989 - 4872251 (-)
Gene ID: Rep_490_c_2_3677
Type: CAZyme
Location: 4872407 - 4873948 (+)
Type: CAZyme
Location: 4872407 - 4873948 (+)
Gene ID: Rep_490_c_2_3678
Type: CAZyme
Location: 4873974 - 4875956 (+)
Type: CAZyme
Location: 4873974 - 4875956 (+)
Gene ID: Rep_490_c_2_3679
Type: CAZyme
Location: 4875979 - 4876923 (+)
Type: CAZyme
Location: 4875979 - 4876923 (+)
Gene ID: Rep_490_c_2_3680
Type: pfam
Location: 4877043 - 4878197 (-)
Type: pfam
Location: 4877043 - 4878197 (-)
Gene ID: Rep_490_c_2_3681
Type: TC
Location: 4878241 - 4879551 (-)
Type: TC
Location: 4878241 - 4879551 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides thetaiotaomicron
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.