Cluster: Rep_490_CGC8
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 5
- Substrate: fructan
- Genome ID: Rep_490
- CGC Family ID: CGCFAM_00017
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_490_c_2 | Rep_490_c_2_438 | 519703 | 520872 | - | 2.A.1.7.17 |
| CAZyme | Rep_490_c_2 | Rep_490_c_2_439 | 521152 | 522981 | - | GH32 |
| CAZyme | Rep_490_c_2 | Rep_490_c_2_440 | 523111 | 524682 | - | GH32 |
| pfam | Rep_490_c_2 | Rep_490_c_2_441 | 524698 | 526083 | - | DUF4960 |
| pfam | Rep_490_c_2 | Rep_490_c_2_442 | 526110 | 527822 | - | SusD_RagB | SusD-like_3 |
| TC | Rep_490_c_2 | Rep_490_c_2_443 | 527850 | 530963 | - | 1.B.14.6.1 |
| NULL(UNKNOWN) | Rep_490_c_2 | Rep_490_c_2_444 | 531201 | 531368 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | Rep_490_c_2 | Rep_490_c_2_445 | 531403 | 532275 | + | Aldose_epim |
| CAZyme | Rep_490_c_2 | Rep_490_c_2_446 | 532480 | 534360 | - | GH32 |
| pfam | Rep_490_c_2 | Rep_490_c_2_447 | 534991 | 536505 | - | TROVE | TROVE |
| pfam | Rep_490_c_2 | Rep_490_c_2_448 | 536620 | 537642 | + | WYL |
| CAZyme | Rep_490_c_2 | Rep_490_c_2_449 | 537818 | 541075 | + | GH2 |
| CAZyme | Rep_490_c_2 | Rep_490_c_2_450 | 541093 | 543348 | + | GH92 |
Gene ID: Rep_490_c_2_438
Type: TC
Location: 519703 - 520872 (-)
Type: TC
Location: 519703 - 520872 (-)
Gene ID: Rep_490_c_2_439
Type: CAZyme
Location: 521152 - 522981 (-)
Type: CAZyme
Location: 521152 - 522981 (-)
Gene ID: Rep_490_c_2_440
Type: CAZyme
Location: 523111 - 524682 (-)
Type: CAZyme
Location: 523111 - 524682 (-)
Gene ID: Rep_490_c_2_441
Type: pfam
Location: 524698 - 526083 (-)
Type: pfam
Location: 524698 - 526083 (-)
Gene ID: Rep_490_c_2_442
Type: pfam
Location: 526110 - 527822 (-)
Type: pfam
Location: 526110 - 527822 (-)
Gene ID: Rep_490_c_2_443
Type: TC
Location: 527850 - 530963 (-)
Type: TC
Location: 527850 - 530963 (-)
Gene ID: Rep_490_c_2_444
Type:
Location: 531201 - 531368 (+)
Type:
Location: 531201 - 531368 (+)
Gene ID: Rep_490_c_2_445
Type: pfam
Location: 531403 - 532275 (+)
Type: pfam
Location: 531403 - 532275 (+)
Gene ID: Rep_490_c_2_446
Type: CAZyme
Location: 532480 - 534360 (-)
Type: CAZyme
Location: 532480 - 534360 (-)
Gene ID: Rep_490_c_2_447
Type: pfam
Location: 534991 - 536505 (-)
Type: pfam
Location: 534991 - 536505 (-)
Gene ID: Rep_490_c_2_448
Type: pfam
Location: 536620 - 537642 (+)
Type: pfam
Location: 536620 - 537642 (+)
Gene ID: Rep_490_c_2_449
Type: CAZyme
Location: 537818 - 541075 (+)
Type: CAZyme
Location: 537818 - 541075 (+)
Gene ID: Rep_490_c_2_450
Type: CAZyme
Location: 541093 - 543348 (+)
Type: CAZyme
Location: 541093 - 543348 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides thetaiotaomicron
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_490_c_2_442 | vegan > omnivore | 1.27393 | 0.02930 |