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Cluster: Rep_490_CGC74

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_490_c_2 Rep_490_c_2_3352 4416023 4418464 - GH2
CAZyme Rep_490_c_2 Rep_490_c_2_3353 4418535 4419599 - GH53
pfam Rep_490_c_2 Rep_490_c_2_3354 4419647 4421389 - SusE | DUF5111 | DUF5114
TC Rep_490_c_2 Rep_490_c_2_3355 4421413 4422990 - 8.A.46.1.1
TC Rep_490_c_2 Rep_490_c_2_3356 4423010 4425985 - 1.B.14.6.1
CAZyme Rep_490_c_2 Rep_490_c_2_3357 4426040 4428682 - GH147
TF Rep_490_c_2 Rep_490_c_2_3358 4428798 4432346 - HTH_AraC
pfam Rep_490_c_2 Rep_490_c_2_3359 4432476 4433027 + DUF4738
CAZyme Rep_490_c_2 Rep_490_c_2_3360 4433163 4434341 + PL13
Gene ID: Rep_490_c_2_3352
Type: CAZyme
Location: 4416023 - 4418464 (-)
Gene ID: Rep_490_c_2_3353
Type: CAZyme
Location: 4418535 - 4419599 (-)
Gene ID: Rep_490_c_2_3354
Type: pfam
Location: 4419647 - 4421389 (-)
Gene ID: Rep_490_c_2_3355
Type: TC
Location: 4421413 - 4422990 (-)
Gene ID: Rep_490_c_2_3356
Type: TC
Location: 4423010 - 4425985 (-)
Gene ID: Rep_490_c_2_3357
Type: CAZyme
Location: 4426040 - 4428682 (-)
Gene ID: Rep_490_c_2_3358
Type: TF
Location: 4428798 - 4432346 (-)
Gene ID: Rep_490_c_2_3359
Type: pfam
Location: 4432476 - 4433027 (+)
Gene ID: Rep_490_c_2_3360
Type: CAZyme
Location: 4433163 - 4434341 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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