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Cluster: Rep_490_CGC73

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_490_c_2 Rep_490_c_2_3339 4390768 4392768 - PL12_2
CAZyme Rep_490_c_2 Rep_490_c_2_3340 4392824 4394128 - GH88
pfam Rep_490_c_2 Rep_490_c_2_3341 4394313 4395986 - SusD_RagB | SusD-like_3
TC Rep_490_c_2 Rep_490_c_2_3342 4396004 4399147 - 1.B.14.6.1
pfam Rep_490_c_2 Rep_490_c_2_3343 4399172 4401352 - SGBP_BT4661-like
CAZyme Rep_490_c_2 Rep_490_c_2_3344 4401371 4403479 - PL12_2
TF Rep_490_c_2 Rep_490_c_2_3345 4403904 4407965 - HTH_AraC
STP Rep_490_c_2 Rep_490_c_2_3346 4408136 4409506 - PALP
TC Rep_490_c_2 Rep_490_c_2_3347 4409652 4411481 + 2.A.38.4.3
Gene ID: Rep_490_c_2_3339
Type: CAZyme
Location: 4390768 - 4392768 (-)
Gene ID: Rep_490_c_2_3340
Type: CAZyme
Location: 4392824 - 4394128 (-)
Gene ID: Rep_490_c_2_3341
Type: pfam
Location: 4394313 - 4395986 (-)
Gene ID: Rep_490_c_2_3342
Type: TC
Location: 4396004 - 4399147 (-)
Gene ID: Rep_490_c_2_3343
Type: pfam
Location: 4399172 - 4401352 (-)
Gene ID: Rep_490_c_2_3344
Type: CAZyme
Location: 4401371 - 4403479 (-)
Gene ID: Rep_490_c_2_3345
Type: TF
Location: 4403904 - 4407965 (-)
Gene ID: Rep_490_c_2_3346
Type: STP
Location: 4408136 - 4409506 (-)
Gene ID: Rep_490_c_2_3347
Type: TC
Location: 4409652 - 4411481 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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