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Cluster: Rep_490_CGC66

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_490_c_2 Rep_490_c_2_3018 4020496 4022391 + 2.A.21.9.2
TF Rep_490_c_2 Rep_490_c_2_3019 4022781 4023356 - GerE
STP Rep_490_c_2 Rep_490_c_2_3020 4023486 4024514 + FecR
TC Rep_490_c_2 Rep_490_c_2_3021 4024674 4028210 + 1.B.14.6.1
pfam Rep_490_c_2 Rep_490_c_2_3022 4028245 4030131 + SusD_RagB | SusD-like_3
CAZyme Rep_490_c_2 Rep_490_c_2_3023 4030391 4032601 + GH89
NULL(UNKNOWN) Rep_490_c_2 Rep_490_c_2_3024 4032833 4033279 - NULL(UNKNOWN)
[View Structural Homologs]
pfam Rep_490_c_2 Rep_490_c_2_3025 4033341 4034450 - DUF6340
TC Rep_490_c_2 Rep_490_c_2_3026 4034572 4037892 - 3.A.5.1.1
Gene ID: Rep_490_c_2_3018
Type: TC
Location: 4020496 - 4022391 (+)
Gene ID: Rep_490_c_2_3019
Type: TF
Location: 4022781 - 4023356 (-)
Gene ID: Rep_490_c_2_3020
Type: STP
Location: 4023486 - 4024514 (+)
Gene ID: Rep_490_c_2_3021
Type: TC
Location: 4024674 - 4028210 (+)
Gene ID: Rep_490_c_2_3022
Type: pfam
Location: 4028245 - 4030131 (+)
Gene ID: Rep_490_c_2_3023
Type: CAZyme
Location: 4030391 - 4032601 (+)
Gene ID: Rep_490_c_2_3024
Type:
Location: 4032833 - 4033279 (-)
Gene ID: Rep_490_c_2_3025
Type: pfam
Location: 4033341 - 4034450 (-)
Gene ID: Rep_490_c_2_3026
Type: TC
Location: 4034572 - 4037892 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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