Cluster: Rep_490_CGC62
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 2
- Substrate: pectin/host glycan
- Genome ID: Rep_490
- CGC Family ID: CGCFAM_00183
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_490_c_2 | Rep_490_c_2_2942 | 3910875 | 3911321 | + | 1.A.22.1.1 |
| peptidase | Rep_490_c_2 | Rep_490_c_2_2943 | 3911528 | 3913051 | + | C26.957 |
| pfam | Rep_490_c_2 | Rep_490_c_2_2944 | 3914019 | 3915470 | + | NHL |
| TC | Rep_490_c_2 | Rep_490_c_2_2945 | 3915488 | 3918607 | + | 1.B.14.6.1 |
| pfam | Rep_490_c_2 | Rep_490_c_2_2946 | 3918629 | 3920680 | + | SusD_RagB | SusD-like_3 |
| pfam | Rep_490_c_2 | Rep_490_c_2_2947 | 3920709 | 3921704 | + | BT_3987-like_N | BT_3044-like_C | DUF4973 |
| CAZyme | Rep_490_c_2 | Rep_490_c_2_2948 | 3921718 | 3923553 | + | CBM32 |
| NULL(UNKNOWN) | Rep_490_c_2 | Rep_490_c_2_2949 | 3923672 | 3924373 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_490_c_2 | Rep_490_c_2_2950 | 3924379 | 3927369 | + | CBM32 |
Gene ID: Rep_490_c_2_2942
Type: TC
Location: 3910875 - 3911321 (+)
Type: TC
Location: 3910875 - 3911321 (+)
Gene ID: Rep_490_c_2_2943
Type: peptidase
Location: 3911528 - 3913051 (+)
Type: peptidase
Location: 3911528 - 3913051 (+)
Gene ID: Rep_490_c_2_2944
Type: pfam
Location: 3914019 - 3915470 (+)
Type: pfam
Location: 3914019 - 3915470 (+)
Gene ID: Rep_490_c_2_2945
Type: TC
Location: 3915488 - 3918607 (+)
Type: TC
Location: 3915488 - 3918607 (+)
Gene ID: Rep_490_c_2_2946
Type: pfam
Location: 3918629 - 3920680 (+)
Type: pfam
Location: 3918629 - 3920680 (+)
Gene ID: Rep_490_c_2_2947
Type: pfam
Location: 3920709 - 3921704 (+)
Type: pfam
Location: 3920709 - 3921704 (+)
Gene ID: Rep_490_c_2_2948
Type: CAZyme
Location: 3921718 - 3923553 (+)
Type: CAZyme
Location: 3921718 - 3923553 (+)
Gene ID: Rep_490_c_2_2949
Type:
Location: 3923672 - 3924373 (+)
Type:
Location: 3923672 - 3924373 (+)
Gene ID: Rep_490_c_2_2950
Type: CAZyme
Location: 3924379 - 3927369 (+)
Type: CAZyme
Location: 3924379 - 3927369 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides thetaiotaomicron
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.