Cluster: Rep_490_CGC61
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 5
- Substrate: host glycan
- Genome ID: Rep_490
- CGC Family ID: CGCFAM_00720
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_490_c_2 | Rep_490_c_2_2917 | 3877166 | 3878065 | + | 2.A.7.3.57 |
| pfam | Rep_490_c_2 | Rep_490_c_2_2918 | 3878076 | 3878726 | + | DUF3256 |
| pfam | Rep_490_c_2 | Rep_490_c_2_2919 | 3878772 | 3879863 | - | APH |
| CAZyme | Rep_490_c_2 | Rep_490_c_2_2920 | 3879893 | 3883267 | - | GH2 |
| TC | Rep_490_c_2 | Rep_490_c_2_2921 | 3883291 | 3884217 | - | 2.A.115.1.1 |
| CAZyme | Rep_490_c_2 | Rep_490_c_2_2922 | 3884290 | 3885693 | - | GH109 |
| CAZyme | Rep_490_c_2 | Rep_490_c_2_2923 | 3885927 | 3888500 | - | CBM32 |
| pfam | Rep_490_c_2 | Rep_490_c_2_2924 | 3888583 | 3889875 | - | BT_3987-like_N |
| pfam | Rep_490_c_2 | Rep_490_c_2_2925 | 3889912 | 3891852 | - | SusD_RagB | SusD-like_3 |
| TC | Rep_490_c_2 | Rep_490_c_2_2926 | 3891859 | 3895212 | - | 1.B.14.6.1 |
| STP | Rep_490_c_2 | Rep_490_c_2_2927 | 3895263 | 3896201 | - | FecR |
| STP | Rep_490_c_2 | Rep_490_c_2_2928 | 3896546 | 3897091 | + | Sigma70_r4_2 |
| CAZyme | Rep_490_c_2 | Rep_490_c_2_2929 | 3897156 | 3899003 | - | GH110 |
| CAZyme | Rep_490_c_2 | Rep_490_c_2_2930 | 3899041 | 3900300 | - | GH109 |
Gene ID: Rep_490_c_2_2917
Type: TC
Location: 3877166 - 3878065 (+)
Type: TC
Location: 3877166 - 3878065 (+)
Gene ID: Rep_490_c_2_2918
Type: pfam
Location: 3878076 - 3878726 (+)
Type: pfam
Location: 3878076 - 3878726 (+)
Gene ID: Rep_490_c_2_2919
Type: pfam
Location: 3878772 - 3879863 (-)
Type: pfam
Location: 3878772 - 3879863 (-)
Gene ID: Rep_490_c_2_2920
Type: CAZyme
Location: 3879893 - 3883267 (-)
Type: CAZyme
Location: 3879893 - 3883267 (-)
Gene ID: Rep_490_c_2_2921
Type: TC
Location: 3883291 - 3884217 (-)
Type: TC
Location: 3883291 - 3884217 (-)
Gene ID: Rep_490_c_2_2922
Type: CAZyme
Location: 3884290 - 3885693 (-)
Type: CAZyme
Location: 3884290 - 3885693 (-)
Gene ID: Rep_490_c_2_2923
Type: CAZyme
Location: 3885927 - 3888500 (-)
Type: CAZyme
Location: 3885927 - 3888500 (-)
Gene ID: Rep_490_c_2_2924
Type: pfam
Location: 3888583 - 3889875 (-)
Type: pfam
Location: 3888583 - 3889875 (-)
Gene ID: Rep_490_c_2_2925
Type: pfam
Location: 3889912 - 3891852 (-)
Type: pfam
Location: 3889912 - 3891852 (-)
Gene ID: Rep_490_c_2_2926
Type: TC
Location: 3891859 - 3895212 (-)
Type: TC
Location: 3891859 - 3895212 (-)
Gene ID: Rep_490_c_2_2927
Type: STP
Location: 3895263 - 3896201 (-)
Type: STP
Location: 3895263 - 3896201 (-)
Gene ID: Rep_490_c_2_2928
Type: STP
Location: 3896546 - 3897091 (+)
Type: STP
Location: 3896546 - 3897091 (+)
Gene ID: Rep_490_c_2_2929
Type: CAZyme
Location: 3897156 - 3899003 (-)
Type: CAZyme
Location: 3897156 - 3899003 (-)
Gene ID: Rep_490_c_2_2930
Type: CAZyme
Location: 3899041 - 3900300 (-)
Type: CAZyme
Location: 3899041 - 3900300 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides thetaiotaomicron
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.