Cluster: Rep_490_CGC59
🧬 Cluster Details
- Gene Count: 22
- CAZyme Count: 7
- Substrate:
- Genome ID: Rep_490
- CGC Family ID: CGCFAM_00982
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_490_c_2 | Rep_490_c_2_2787 | 3678981 | 3679799 | + | 2.A.64.1.2 |
| pfam | Rep_490_c_2 | Rep_490_c_2_2788 | 3679914 | 3683288 | + | DEAD | ResIII | AAA_11 | AAA_11 | AAA_12 | AAA_19 | AAA_30 |
| TC | Rep_490_c_2 | Rep_490_c_2_2789 | 3683659 | 3685176 | - | 2.A.1.14.25 |
| NULL(UNKNOWN) | Rep_490_c_2 | Rep_490_c_2_2790 | 3685260 | 3685391 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | Rep_490_c_2 | Rep_490_c_2_2791 | 3685436 | 3686356 | - | KduI |
| TC | Rep_490_c_2 | Rep_490_c_2_2792 | 3686389 | 3687786 | - | 4.A.5.1.4 |
| CAZyme | Rep_490_c_2 | Rep_490_c_2_2793 | 3688088 | 3689287 | + | GH105 |
| CAZyme | Rep_490_c_2 | Rep_490_c_2_2794 | 3689297 | 3690265 | + | CE8 |
| CAZyme | Rep_490_c_2 | Rep_490_c_2_2795 | 3690406 | 3692133 | + | CE12 | CE8 |
| TF | Rep_490_c_2 | Rep_490_c_2_2796 | 3692288 | 3696799 | + | HTH_AraC |
| pfam | Rep_490_c_2 | Rep_490_c_2_2797 | 3697688 | 3699265 | - | fn3 | DUF4957 | DUF5123 |
| TC | Rep_490_c_2 | Rep_490_c_2_2798 | 3699279 | 3701099 | - | 8.A.46.1.4 |
| TC | Rep_490_c_2 | Rep_490_c_2_2799 | 3701119 | 3704340 | - | 1.B.14.6.1 |
| CAZyme | Rep_490_c_2 | Rep_490_c_2_2800 | 3704560 | 3706053 | - | PL1_2 |
| CAZyme | Rep_490_c_2 | Rep_490_c_2_2801 | 3706060 | 3707631 | - | PL1_2 |
| pfam | Rep_490_c_2 | Rep_490_c_2_2802 | 3707915 | 3708709 | + | LiaF-like_C | LiaI-LiaF-like_TM1 | LiaF-TM |
| TF | Rep_490_c_2 | Rep_490_c_2_2803 | 3708713 | 3709525 | + | LytTR |
| CAZyme | Rep_490_c_2 | Rep_490_c_2_2804 | 3709976 | 3711655 | + | PL1_2 |
| NULL(UNKNOWN) | Rep_490_c_2 | Rep_490_c_2_2805 | 3711685 | 3713352 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_490_c_2 | Rep_490_c_2_2806 | 3713400 | 3716807 | + | 1.B.14.6.1 |
| pfam | Rep_490_c_2 | Rep_490_c_2_2807 | 3716822 | 3718897 | + | SusD_RagB | SusD-like_3 |
| CAZyme | Rep_490_c_2 | Rep_490_c_2_2808 | 3719188 | 3720774 | + | GH28 |
Gene ID: Rep_490_c_2_2787
Type: TC
Location: 3678981 - 3679799 (+)
Type: TC
Location: 3678981 - 3679799 (+)
Gene ID: Rep_490_c_2_2788
Type: pfam
Location: 3679914 - 3683288 (+)
Type: pfam
Location: 3679914 - 3683288 (+)
Gene ID: Rep_490_c_2_2789
Type: TC
Location: 3683659 - 3685176 (-)
Type: TC
Location: 3683659 - 3685176 (-)
Gene ID: Rep_490_c_2_2790
Type:
Location: 3685260 - 3685391 (+)
Type:
Location: 3685260 - 3685391 (+)
Gene ID: Rep_490_c_2_2791
Type: pfam
Location: 3685436 - 3686356 (-)
Type: pfam
Location: 3685436 - 3686356 (-)
Gene ID: Rep_490_c_2_2792
Type: TC
Location: 3686389 - 3687786 (-)
Type: TC
Location: 3686389 - 3687786 (-)
Gene ID: Rep_490_c_2_2793
Type: CAZyme
Location: 3688088 - 3689287 (+)
Type: CAZyme
Location: 3688088 - 3689287 (+)
Gene ID: Rep_490_c_2_2794
Type: CAZyme
Location: 3689297 - 3690265 (+)
Type: CAZyme
Location: 3689297 - 3690265 (+)
Gene ID: Rep_490_c_2_2795
Type: CAZyme
Location: 3690406 - 3692133 (+)
Type: CAZyme
Location: 3690406 - 3692133 (+)
Gene ID: Rep_490_c_2_2796
Type: TF
Location: 3692288 - 3696799 (+)
Type: TF
Location: 3692288 - 3696799 (+)
Gene ID: Rep_490_c_2_2797
Type: pfam
Location: 3697688 - 3699265 (-)
Type: pfam
Location: 3697688 - 3699265 (-)
Gene ID: Rep_490_c_2_2798
Type: TC
Location: 3699279 - 3701099 (-)
Type: TC
Location: 3699279 - 3701099 (-)
Gene ID: Rep_490_c_2_2799
Type: TC
Location: 3701119 - 3704340 (-)
Type: TC
Location: 3701119 - 3704340 (-)
Gene ID: Rep_490_c_2_2800
Type: CAZyme
Location: 3704560 - 3706053 (-)
Type: CAZyme
Location: 3704560 - 3706053 (-)
Gene ID: Rep_490_c_2_2801
Type: CAZyme
Location: 3706060 - 3707631 (-)
Type: CAZyme
Location: 3706060 - 3707631 (-)
Gene ID: Rep_490_c_2_2802
Type: pfam
Location: 3707915 - 3708709 (+)
Type: pfam
Location: 3707915 - 3708709 (+)
Gene ID: Rep_490_c_2_2803
Type: TF
Location: 3708713 - 3709525 (+)
Type: TF
Location: 3708713 - 3709525 (+)
Gene ID: Rep_490_c_2_2804
Type: CAZyme
Location: 3709976 - 3711655 (+)
Type: CAZyme
Location: 3709976 - 3711655 (+)
Gene ID: Rep_490_c_2_2805
Type:
Location: 3711685 - 3713352 (+)
Type:
Location: 3711685 - 3713352 (+)
Gene ID: Rep_490_c_2_2806
Type: TC
Location: 3713400 - 3716807 (+)
Type: TC
Location: 3713400 - 3716807 (+)
Gene ID: Rep_490_c_2_2807
Type: pfam
Location: 3716822 - 3718897 (+)
Type: pfam
Location: 3716822 - 3718897 (+)
Gene ID: Rep_490_c_2_2808
Type: CAZyme
Location: 3719188 - 3720774 (+)
Type: CAZyme
Location: 3719188 - 3720774 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides thetaiotaomicron
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.