Cluster: Rep_490_CGC58
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 4
- Substrate:
- Genome ID: Rep_490
- CGC Family ID: CGCFAM_01567
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_490_c_2 | Rep_490_c_2_2774 | 3657444 | 3660527 | + | 1.B.14.6.1 |
| NULL(UNKNOWN) | Rep_490_c_2 | Rep_490_c_2_2775 | 3660557 | 3660658 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_490_c_2 | Rep_490_c_2_2776 | 3660680 | 3662959 | + | GH92 |
| CAZyme | Rep_490_c_2 | Rep_490_c_2_2777 | 3663007 | 3665163 | + | GH92 |
| CAZyme | Rep_490_c_2 | Rep_490_c_2_2778 | 3665209 | 3666345 | + | GH130_3 |
| CAZyme | Rep_490_c_2 | Rep_490_c_2_2779 | 3666357 | 3667895 | + | GH43_8 |
| pfam | Rep_490_c_2 | Rep_490_c_2_2780 | 3667989 | 3669371 | + | Lipase_GDSL | Lipase_GDSL_2 |
| TC | Rep_490_c_2 | Rep_490_c_2_2781 | 3669456 | 3670892 | - | 2.A.38.1.1 |
Gene ID: Rep_490_c_2_2774
Type: TC
Location: 3657444 - 3660527 (+)
Type: TC
Location: 3657444 - 3660527 (+)
Gene ID: Rep_490_c_2_2775
Type:
Location: 3660557 - 3660658 (+)
Type:
Location: 3660557 - 3660658 (+)
Gene ID: Rep_490_c_2_2776
Type: CAZyme
Location: 3660680 - 3662959 (+)
Type: CAZyme
Location: 3660680 - 3662959 (+)
Gene ID: Rep_490_c_2_2777
Type: CAZyme
Location: 3663007 - 3665163 (+)
Type: CAZyme
Location: 3663007 - 3665163 (+)
Gene ID: Rep_490_c_2_2778
Type: CAZyme
Location: 3665209 - 3666345 (+)
Type: CAZyme
Location: 3665209 - 3666345 (+)
Gene ID: Rep_490_c_2_2779
Type: CAZyme
Location: 3666357 - 3667895 (+)
Type: CAZyme
Location: 3666357 - 3667895 (+)
Gene ID: Rep_490_c_2_2780
Type: pfam
Location: 3667989 - 3669371 (+)
Type: pfam
Location: 3667989 - 3669371 (+)
Gene ID: Rep_490_c_2_2781
Type: TC
Location: 3669456 - 3670892 (-)
Type: TC
Location: 3669456 - 3670892 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides thetaiotaomicron
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_490_c_2_2775 | vegan > omnivore | 1.47395 | 0.02257 |
| Rep_490_c_2_2776 | vegan > omnivore | 1.01692 | 0.02254 |
| Rep_490_c_2_2776 | vegetarian > omnivore | 1.05448 | 0.02767 |