Cluster: Rep_490_CGC54
🧬 Cluster Details
- Gene Count: 17
- CAZyme Count: 5
- Substrate:
- Genome ID: Rep_490
- CGC Family ID: CGCFAM_00363
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_490_c_2 | Rep_490_c_2_2673 | 3514173 | 3517580 | + | 1.B.14.6.13 |
| TC | Rep_490_c_2 | Rep_490_c_2_2674 | 3517597 | 3519210 | + | 8.A.46.2.2 |
| pfam | Rep_490_c_2 | Rep_490_c_2_2675 | 3519235 | 3520311 | + | GH18_BT1044-like |
| pfam | Rep_490_c_2 | Rep_490_c_2_2676 | 3520320 | 3521474 | + | BT_3987-like_N | Laminin_G_3 |
| CAZyme | Rep_490_c_2 | Rep_490_c_2_2677 | 3521514 | 3522938 | + | GH18 |
| pfam | Rep_490_c_2 | Rep_490_c_2_2678 | 3522969 | 3524303 | + | F5_F8_type_C | DUF4989 | F5_F8_type_C_2 |
| pfam | Rep_490_c_2 | Rep_490_c_2_2679 | 3524551 | 3524985 | - | DUF6078 |
| CAZyme | Rep_490_c_2 | Rep_490_c_2_2680 | 3525176 | 3527446 | - | GH92 |
| CAZyme | Rep_490_c_2 | Rep_490_c_2_2681 | 3527470 | 3529755 | - | GH92 |
| STP | Rep_490_c_2 | Rep_490_c_2_2682 | 3529787 | 3530782 | - | FecR |
| TF | Rep_490_c_2 | Rep_490_c_2_2683 | 3530835 | 3531389 | - | GerE |
| CAZyme | Rep_490_c_2 | Rep_490_c_2_2684 | 3531417 | 3533648 | - | GH92 |
| pfam | Rep_490_c_2 | Rep_490_c_2_2685 | 3533881 | 3536499 | - | tRNA-synt_2c | DHHA1 | tRNA_SAD |
| TC | Rep_490_c_2 | Rep_490_c_2_2686 | 3536607 | 3537575 | + | 1.A.34.1.3 |
| TF | Rep_490_c_2 | Rep_490_c_2_2687 | 3537597 | 3537938 | + | MerR |
| STP | Rep_490_c_2 | Rep_490_c_2_2688 | 3537940 | 3540183 | - | HD |
| CAZyme | Rep_490_c_2 | Rep_490_c_2_2689 | 3540256 | 3541551 | - | GH23 |
Gene ID: Rep_490_c_2_2673
Type: TC
Location: 3514173 - 3517580 (+)
Type: TC
Location: 3514173 - 3517580 (+)
Gene ID: Rep_490_c_2_2674
Type: TC
Location: 3517597 - 3519210 (+)
Type: TC
Location: 3517597 - 3519210 (+)
Gene ID: Rep_490_c_2_2675
Type: pfam
Location: 3519235 - 3520311 (+)
Type: pfam
Location: 3519235 - 3520311 (+)
Gene ID: Rep_490_c_2_2676
Type: pfam
Location: 3520320 - 3521474 (+)
Type: pfam
Location: 3520320 - 3521474 (+)
Gene ID: Rep_490_c_2_2677
Type: CAZyme
Location: 3521514 - 3522938 (+)
Type: CAZyme
Location: 3521514 - 3522938 (+)
Gene ID: Rep_490_c_2_2678
Type: pfam
Location: 3522969 - 3524303 (+)
Type: pfam
Location: 3522969 - 3524303 (+)
Gene ID: Rep_490_c_2_2679
Type: pfam
Location: 3524551 - 3524985 (-)
Type: pfam
Location: 3524551 - 3524985 (-)
Gene ID: Rep_490_c_2_2680
Type: CAZyme
Location: 3525176 - 3527446 (-)
Type: CAZyme
Location: 3525176 - 3527446 (-)
Gene ID: Rep_490_c_2_2681
Type: CAZyme
Location: 3527470 - 3529755 (-)
Type: CAZyme
Location: 3527470 - 3529755 (-)
Gene ID: Rep_490_c_2_2682
Type: STP
Location: 3529787 - 3530782 (-)
Type: STP
Location: 3529787 - 3530782 (-)
Gene ID: Rep_490_c_2_2683
Type: TF
Location: 3530835 - 3531389 (-)
Type: TF
Location: 3530835 - 3531389 (-)
Gene ID: Rep_490_c_2_2684
Type: CAZyme
Location: 3531417 - 3533648 (-)
Type: CAZyme
Location: 3531417 - 3533648 (-)
Gene ID: Rep_490_c_2_2685
Type: pfam
Location: 3533881 - 3536499 (-)
Type: pfam
Location: 3533881 - 3536499 (-)
Gene ID: Rep_490_c_2_2686
Type: TC
Location: 3536607 - 3537575 (+)
Type: TC
Location: 3536607 - 3537575 (+)
Gene ID: Rep_490_c_2_2687
Type: TF
Location: 3537597 - 3537938 (+)
Type: TF
Location: 3537597 - 3537938 (+)
Gene ID: Rep_490_c_2_2688
Type: STP
Location: 3537940 - 3540183 (-)
Type: STP
Location: 3537940 - 3540183 (-)
Gene ID: Rep_490_c_2_2689
Type: CAZyme
Location: 3540256 - 3541551 (-)
Type: CAZyme
Location: 3540256 - 3541551 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides thetaiotaomicron
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.