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Cluster: Rep_490_CGC50

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_490_c_2 Rep_490_c_2_2473 3243711 3244862 - GH130_3
CAZyme Rep_490_c_2 Rep_490_c_2_2474 3245313 3246758 - GH125
CAZyme Rep_490_c_2 Rep_490_c_2_2475 3246804 3247967 - GH76
pfam Rep_490_c_2 Rep_490_c_2_2476 3248002 3248949 - Exo_endo_phos
CAZyme Rep_490_c_2 Rep_490_c_2_2477 3249008 3251290 - GH92
TF Rep_490_c_2 Rep_490_c_2_2478 3251500 3255537 + HTH_AraC
pfam Rep_490_c_2 Rep_490_c_2_2479 3256010 3257374 + NHL | TIG
TC Rep_490_c_2 Rep_490_c_2_2480 3257398 3260523 + 1.B.14.6.1
Gene ID: Rep_490_c_2_2473
Type: CAZyme
Location: 3243711 - 3244862 (-)
Gene ID: Rep_490_c_2_2474
Type: CAZyme
Location: 3245313 - 3246758 (-)
Gene ID: Rep_490_c_2_2475
Type: CAZyme
Location: 3246804 - 3247967 (-)
Gene ID: Rep_490_c_2_2476
Type: pfam
Location: 3248002 - 3248949 (-)
Gene ID: Rep_490_c_2_2477
Type: CAZyme
Location: 3249008 - 3251290 (-)
Gene ID: Rep_490_c_2_2478
Type: TF
Location: 3251500 - 3255537 (+)
Gene ID: Rep_490_c_2_2479
Type: pfam
Location: 3256010 - 3257374 (+)
Gene ID: Rep_490_c_2_2480
Type: TC
Location: 3257398 - 3260523 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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