Cluster: Rep_490_CGC47
🧬 Cluster Details
- Gene Count: 35
- CAZyme Count: 18
- Substrate:
- Genome ID: Rep_490
- CGC Family ID: CGCFAM_02229
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_490_c_2 | Rep_490_c_2_2332 | 3060821 | 3063157 | + | GH35 |
| CAZyme | Rep_490_c_2 | Rep_490_c_2_2333 | 3063228 | 3064199 | + | GH43_19 |
| CAZyme | Rep_490_c_2 | Rep_490_c_2_2334 | 3064250 | 3066685 | + | CBM91 | GH43_19 | GH43_9 |
| CAZyme | Rep_490_c_2 | Rep_490_c_2_2335 | 3066756 | 3069233 | + | GH51_2 |
| pfam | Rep_490_c_2 | Rep_490_c_2_2336 | 3069712 | 3070905 | - | DDE_Tnp_1 | DDE_Tnp_1_assoc |
| CAZyme | Rep_490_c_2 | Rep_490_c_2_2337 | 3071500 | 3073968 | - | GH31_4 |
| TF | Rep_490_c_2 | Rep_490_c_2_2338 | 3074059 | 3076773 | - | HTH_AraC |
| CAZyme | Rep_490_c_2 | Rep_490_c_2_2339 | 3077001 | 3078944 | + | GH97 |
| CAZyme | Rep_490_c_2 | Rep_490_c_2_2340 | 3079116 | 3080501 | + | GH43_34 |
| CAZyme | Rep_490_c_2 | Rep_490_c_2_2341 | 3080671 | 3082314 | + | GH29 |
| pfam | Rep_490_c_2 | Rep_490_c_2_2342 | 3082326 | 3082715 | + | rhaM |
| TF | Rep_490_c_2 | Rep_490_c_2_2343 | 3082788 | 3083648 | - | HTH_AraC | HTH_AraC |
| CAZyme | Rep_490_c_2 | Rep_490_c_2_2344 | 3083902 | 3085503 | + | CBM91 | GH43_10 |
| CAZyme | Rep_490_c_2 | Rep_490_c_2_2345 | 3085515 | 3087431 | + | GH97 |
| pfam | Rep_490_c_2 | Rep_490_c_2_2346 | 3087540 | 3088391 | + | TonB_C | DUF4488 |
| CAZyme | Rep_490_c_2 | Rep_490_c_2_2347 | 3088509 | 3090515 | - | GH127 |
| CAZyme | Rep_490_c_2 | Rep_490_c_2_2348 | 3090552 | 3091553 | - | GH43_34 |
| pfam | Rep_490_c_2 | Rep_490_c_2_2349 | 3091765 | 3093525 | + | BNR_4 |
| CAZyme | Rep_490_c_2 | Rep_490_c_2_2350 | 3093522 | 3095543 | + | GH154 |
| TF | Rep_490_c_2 | Rep_490_c_2_2351 | 3095777 | 3099922 | + | HTH_AraC |
| pfam | Rep_490_c_2 | Rep_490_c_2_2352 | 3100564 | 3101856 | + | TIG |
| TC | Rep_490_c_2 | Rep_490_c_2_2353 | 3101877 | 3104978 | + | 1.B.14.6.1 |
| pfam | Rep_490_c_2 | Rep_490_c_2_2354 | 3104991 | 3107006 | + | SusD_RagB | SusD-like_3 |
| pfam | Rep_490_c_2 | Rep_490_c_2_2355 | 3107028 | 3107915 | + | BT_3987-like_N | BT_3044-like_C | DUF4973 |
| CAZyme | Rep_490_c_2 | Rep_490_c_2_2356 | 3108210 | 3110105 | + | GH16_3 | GH43_24 |
| CAZyme | Rep_490_c_2 | Rep_490_c_2_2357 | 3110359 | 3111426 | + | GH43_24 |
| CAZyme | Rep_490_c_2 | Rep_490_c_2_2358 | 3111430 | 3112725 | + | PL42 |
| CAZyme | Rep_490_c_2 | Rep_490_c_2_2359 | 3112730 | 3113875 | + | GH105 |
| pfam | Rep_490_c_2 | Rep_490_c_2_2360 | 3113858 | 3114877 | - | Acetyltransf_1 | Acetyltransf_9 |
| pfam | Rep_490_c_2 | Rep_490_c_2_2361 | 3114891 | 3115808 | - | LPG_synthase_C |
| TC | Rep_490_c_2 | Rep_490_c_2_2362 | 3115864 | 3116559 | - | 2.A.122.1.1 |
| TC | Rep_490_c_2 | Rep_490_c_2_2363 | 3116556 | 3116999 | - | 1.E.14.1.13 |
| pfam | Rep_490_c_2 | Rep_490_c_2_2364 | 3117196 | 3118215 | + | PTA_PTB |
| pfam | Rep_490_c_2 | Rep_490_c_2_2365 | 3118244 | 3119443 | + | Acetate_kinase |
| CAZyme | Rep_490_c_2 | Rep_490_c_2_2366 | 3119478 | 3120692 | + | GT2 |
Gene ID: Rep_490_c_2_2332
Type: CAZyme
Location: 3060821 - 3063157 (+)
Type: CAZyme
Location: 3060821 - 3063157 (+)
Gene ID: Rep_490_c_2_2333
Type: CAZyme
Location: 3063228 - 3064199 (+)
Type: CAZyme
Location: 3063228 - 3064199 (+)
Gene ID: Rep_490_c_2_2334
Type: CAZyme
Location: 3064250 - 3066685 (+)
Type: CAZyme
Location: 3064250 - 3066685 (+)
Gene ID: Rep_490_c_2_2335
Type: CAZyme
Location: 3066756 - 3069233 (+)
Type: CAZyme
Location: 3066756 - 3069233 (+)
Gene ID: Rep_490_c_2_2336
Type: pfam
Location: 3069712 - 3070905 (-)
Type: pfam
Location: 3069712 - 3070905 (-)
Gene ID: Rep_490_c_2_2337
Type: CAZyme
Location: 3071500 - 3073968 (-)
Type: CAZyme
Location: 3071500 - 3073968 (-)
Gene ID: Rep_490_c_2_2338
Type: TF
Location: 3074059 - 3076773 (-)
Type: TF
Location: 3074059 - 3076773 (-)
Gene ID: Rep_490_c_2_2339
Type: CAZyme
Location: 3077001 - 3078944 (+)
Type: CAZyme
Location: 3077001 - 3078944 (+)
Gene ID: Rep_490_c_2_2340
Type: CAZyme
Location: 3079116 - 3080501 (+)
Type: CAZyme
Location: 3079116 - 3080501 (+)
Gene ID: Rep_490_c_2_2341
Type: CAZyme
Location: 3080671 - 3082314 (+)
Type: CAZyme
Location: 3080671 - 3082314 (+)
Gene ID: Rep_490_c_2_2342
Type: pfam
Location: 3082326 - 3082715 (+)
Type: pfam
Location: 3082326 - 3082715 (+)
Gene ID: Rep_490_c_2_2343
Type: TF
Location: 3082788 - 3083648 (-)
Type: TF
Location: 3082788 - 3083648 (-)
Gene ID: Rep_490_c_2_2344
Type: CAZyme
Location: 3083902 - 3085503 (+)
Type: CAZyme
Location: 3083902 - 3085503 (+)
Gene ID: Rep_490_c_2_2345
Type: CAZyme
Location: 3085515 - 3087431 (+)
Type: CAZyme
Location: 3085515 - 3087431 (+)
Gene ID: Rep_490_c_2_2346
Type: pfam
Location: 3087540 - 3088391 (+)
Type: pfam
Location: 3087540 - 3088391 (+)
Gene ID: Rep_490_c_2_2347
Type: CAZyme
Location: 3088509 - 3090515 (-)
Type: CAZyme
Location: 3088509 - 3090515 (-)
Gene ID: Rep_490_c_2_2348
Type: CAZyme
Location: 3090552 - 3091553 (-)
Type: CAZyme
Location: 3090552 - 3091553 (-)
Gene ID: Rep_490_c_2_2349
Type: pfam
Location: 3091765 - 3093525 (+)
Type: pfam
Location: 3091765 - 3093525 (+)
Gene ID: Rep_490_c_2_2350
Type: CAZyme
Location: 3093522 - 3095543 (+)
Type: CAZyme
Location: 3093522 - 3095543 (+)
Gene ID: Rep_490_c_2_2351
Type: TF
Location: 3095777 - 3099922 (+)
Type: TF
Location: 3095777 - 3099922 (+)
Gene ID: Rep_490_c_2_2352
Type: pfam
Location: 3100564 - 3101856 (+)
Type: pfam
Location: 3100564 - 3101856 (+)
Gene ID: Rep_490_c_2_2353
Type: TC
Location: 3101877 - 3104978 (+)
Type: TC
Location: 3101877 - 3104978 (+)
Gene ID: Rep_490_c_2_2354
Type: pfam
Location: 3104991 - 3107006 (+)
Type: pfam
Location: 3104991 - 3107006 (+)
Gene ID: Rep_490_c_2_2355
Type: pfam
Location: 3107028 - 3107915 (+)
Type: pfam
Location: 3107028 - 3107915 (+)
Gene ID: Rep_490_c_2_2356
Type: CAZyme
Location: 3108210 - 3110105 (+)
Type: CAZyme
Location: 3108210 - 3110105 (+)
Gene ID: Rep_490_c_2_2357
Type: CAZyme
Location: 3110359 - 3111426 (+)
Type: CAZyme
Location: 3110359 - 3111426 (+)
Gene ID: Rep_490_c_2_2358
Type: CAZyme
Location: 3111430 - 3112725 (+)
Type: CAZyme
Location: 3111430 - 3112725 (+)
Gene ID: Rep_490_c_2_2359
Type: CAZyme
Location: 3112730 - 3113875 (+)
Type: CAZyme
Location: 3112730 - 3113875 (+)
Gene ID: Rep_490_c_2_2360
Type: pfam
Location: 3113858 - 3114877 (-)
Type: pfam
Location: 3113858 - 3114877 (-)
Gene ID: Rep_490_c_2_2361
Type: pfam
Location: 3114891 - 3115808 (-)
Type: pfam
Location: 3114891 - 3115808 (-)
Gene ID: Rep_490_c_2_2362
Type: TC
Location: 3115864 - 3116559 (-)
Type: TC
Location: 3115864 - 3116559 (-)
Gene ID: Rep_490_c_2_2363
Type: TC
Location: 3116556 - 3116999 (-)
Type: TC
Location: 3116556 - 3116999 (-)
Gene ID: Rep_490_c_2_2364
Type: pfam
Location: 3117196 - 3118215 (+)
Type: pfam
Location: 3117196 - 3118215 (+)
Gene ID: Rep_490_c_2_2365
Type: pfam
Location: 3118244 - 3119443 (+)
Type: pfam
Location: 3118244 - 3119443 (+)
Gene ID: Rep_490_c_2_2366
Type: CAZyme
Location: 3119478 - 3120692 (+)
Type: CAZyme
Location: 3119478 - 3120692 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides thetaiotaomicron
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_490_c_2_2336 | vegan > omnivore | 2.49027 | 0.00365 |
| Rep_490_c_2_2336 | vegetarian > omnivore | 1.84378 | 0.02913 |