Cluster: Rep_490_CGC42
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 4
- Substrate: pectin/host glycan
- Genome ID: Rep_490
- CGC Family ID: CGCFAM_00183
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_490_c_2 | Rep_490_c_2_2137 | 2788336 | 2789433 | + | GH43_26 |
| pfam | Rep_490_c_2 | Rep_490_c_2_2138 | 2789402 | 2790265 | - | ApbE |
| sulfatase | Rep_490_c_2 | Rep_490_c_2_2139 | 2790357 | 2791706 | - | S1_14 |
| CAZyme | Rep_490_c_2 | Rep_490_c_2_2140 | 2791765 | 2793183 | - | GH109 |
| NULL(UNKNOWN) | Rep_490_c_2 | Rep_490_c_2_2141 | 2793230 | 2793472 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_490_c_2 | Rep_490_c_2_2142 | 2793469 | 2794761 | - | GH177 |
| pfam | Rep_490_c_2 | Rep_490_c_2_2143 | 2794863 | 2795864 | - | BT_3987-like_N | BT_3044-like_C | DUF4973 |
| pfam | Rep_490_c_2 | Rep_490_c_2_2144 | 2795883 | 2797928 | - | SusD_RagB | SusD-like_3 |
| TC | Rep_490_c_2 | Rep_490_c_2_2145 | 2797945 | 2801064 | - | 1.B.14.6.1 |
| pfam | Rep_490_c_2 | Rep_490_c_2_2146 | 2801089 | 2802462 | - | TIG |
| sulfatase | Rep_490_c_2 | Rep_490_c_2_2147 | 2802504 | 2803028 | - | S1_4 |
| CAZyme | Rep_490_c_2 | Rep_490_c_2_2148 | 2803638 | 2805116 | - | GH76 |
Gene ID: Rep_490_c_2_2137
Type: CAZyme
Location: 2788336 - 2789433 (+)
Type: CAZyme
Location: 2788336 - 2789433 (+)
Gene ID: Rep_490_c_2_2138
Type: pfam
Location: 2789402 - 2790265 (-)
Type: pfam
Location: 2789402 - 2790265 (-)
Gene ID: Rep_490_c_2_2139
Type: sulfatase
Location: 2790357 - 2791706 (-)
Type: sulfatase
Location: 2790357 - 2791706 (-)
Gene ID: Rep_490_c_2_2140
Type: CAZyme
Location: 2791765 - 2793183 (-)
Type: CAZyme
Location: 2791765 - 2793183 (-)
Gene ID: Rep_490_c_2_2141
Type:
Location: 2793230 - 2793472 (-)
Type:
Location: 2793230 - 2793472 (-)
Gene ID: Rep_490_c_2_2142
Type: CAZyme
Location: 2793469 - 2794761 (-)
Type: CAZyme
Location: 2793469 - 2794761 (-)
Gene ID: Rep_490_c_2_2143
Type: pfam
Location: 2794863 - 2795864 (-)
Type: pfam
Location: 2794863 - 2795864 (-)
Gene ID: Rep_490_c_2_2144
Type: pfam
Location: 2795883 - 2797928 (-)
Type: pfam
Location: 2795883 - 2797928 (-)
Gene ID: Rep_490_c_2_2145
Type: TC
Location: 2797945 - 2801064 (-)
Type: TC
Location: 2797945 - 2801064 (-)
Gene ID: Rep_490_c_2_2146
Type: pfam
Location: 2801089 - 2802462 (-)
Type: pfam
Location: 2801089 - 2802462 (-)
Gene ID: Rep_490_c_2_2147
Type: sulfatase
Location: 2802504 - 2803028 (-)
Type: sulfatase
Location: 2802504 - 2803028 (-)
Gene ID: Rep_490_c_2_2148
Type: CAZyme
Location: 2803638 - 2805116 (-)
Type: CAZyme
Location: 2803638 - 2805116 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides thetaiotaomicron
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_490_c_2_2148 | vegetarian > vegan | 1.04457 | 0.04295 |