Cluster: Rep_490_CGC34
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 7
- Substrate:
- Genome ID: Rep_490
- CGC Family ID: CGCFAM_02278
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_490_c_2 | Rep_490_c_2_1950 | 2523404 | 2525179 | - | GH2 |
| CAZyme | Rep_490_c_2 | Rep_490_c_2_1951 | 2525447 | 2529712 | + | CBM32 | CBM32 | GH2 |
| CAZyme | Rep_490_c_2 | Rep_490_c_2_1952 | 2529815 | 2531767 | - | GH97 |
| CAZyme | Rep_490_c_2 | Rep_490_c_2_1953 | 2532035 | 2534275 | - | GH92 |
| CAZyme | Rep_490_c_2 | Rep_490_c_2_1954 | 2534303 | 2535847 | - | GH76 |
| pfam | Rep_490_c_2 | Rep_490_c_2_1955 | 2535861 | 2536865 | - | BT_3987-like_N | BT_3044-like_C | DUF4973 |
| pfam | Rep_490_c_2 | Rep_490_c_2_1956 | 2536885 | 2538915 | - | SusD_RagB | SusD-like_3 |
| TC | Rep_490_c_2 | Rep_490_c_2_1957 | 2538927 | 2542016 | - | 1.B.14.6.1 |
| pfam | Rep_490_c_2 | Rep_490_c_2_1958 | 2542036 | 2543454 | - | TIG |
| CAZyme | Rep_490_c_2 | Rep_490_c_2_1959 | 2543529 | 2545682 | - | GH31_1 |
| CAZyme | Rep_490_c_2 | Rep_490_c_2_1960 | 2545720 | 2546907 | - | GH76 |
| NULL(UNKNOWN) | Rep_490_c_2 | Rep_490_c_2_1961 | 2547068 | 2547229 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | Rep_490_c_2 | Rep_490_c_2_1962 | 2547278 | 2551378 | + | HTH_AraC |
| TC | Rep_490_c_2 | Rep_490_c_2_1963 | 2551865 | 2553751 | - | 1.I.1.1.3 |
Gene ID: Rep_490_c_2_1950
Type: CAZyme
Location: 2523404 - 2525179 (-)
Type: CAZyme
Location: 2523404 - 2525179 (-)
Gene ID: Rep_490_c_2_1951
Type: CAZyme
Location: 2525447 - 2529712 (+)
Type: CAZyme
Location: 2525447 - 2529712 (+)
Gene ID: Rep_490_c_2_1952
Type: CAZyme
Location: 2529815 - 2531767 (-)
Type: CAZyme
Location: 2529815 - 2531767 (-)
Gene ID: Rep_490_c_2_1953
Type: CAZyme
Location: 2532035 - 2534275 (-)
Type: CAZyme
Location: 2532035 - 2534275 (-)
Gene ID: Rep_490_c_2_1954
Type: CAZyme
Location: 2534303 - 2535847 (-)
Type: CAZyme
Location: 2534303 - 2535847 (-)
Gene ID: Rep_490_c_2_1955
Type: pfam
Location: 2535861 - 2536865 (-)
Type: pfam
Location: 2535861 - 2536865 (-)
Gene ID: Rep_490_c_2_1956
Type: pfam
Location: 2536885 - 2538915 (-)
Type: pfam
Location: 2536885 - 2538915 (-)
Gene ID: Rep_490_c_2_1957
Type: TC
Location: 2538927 - 2542016 (-)
Type: TC
Location: 2538927 - 2542016 (-)
Gene ID: Rep_490_c_2_1958
Type: pfam
Location: 2542036 - 2543454 (-)
Type: pfam
Location: 2542036 - 2543454 (-)
Gene ID: Rep_490_c_2_1959
Type: CAZyme
Location: 2543529 - 2545682 (-)
Type: CAZyme
Location: 2543529 - 2545682 (-)
Gene ID: Rep_490_c_2_1960
Type: CAZyme
Location: 2545720 - 2546907 (-)
Type: CAZyme
Location: 2545720 - 2546907 (-)
Gene ID: Rep_490_c_2_1961
Type:
Location: 2547068 - 2547229 (-)
Type:
Location: 2547068 - 2547229 (-)
Gene ID: Rep_490_c_2_1962
Type: TF
Location: 2547278 - 2551378 (+)
Type: TF
Location: 2547278 - 2551378 (+)
Gene ID: Rep_490_c_2_1963
Type: TC
Location: 2551865 - 2553751 (-)
Type: TC
Location: 2551865 - 2553751 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides thetaiotaomicron
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.