Cluster: Rep_490_CGC31
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 6
- Substrate:
- Genome ID: Rep_490
- CGC Family ID: CGCFAM_10510
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_490_c_2 | Rep_490_c_2_1798 | 2306898 | 2308337 | - | CE20 |
| pfam | Rep_490_c_2 | Rep_490_c_2_1799 | 2309483 | 2312317 | + | tRNA-synt_1 | Anticodon_1 | tRNA-synt_1g | tRNA-synt_1_2 |
| TC | Rep_490_c_2 | Rep_490_c_2_1800 | 2312469 | 2313386 | + | 2.A.115.1.1 |
| sulfatase | Rep_490_c_2 | Rep_490_c_2_1801 | 2313435 | 2314016 | + | S1_7 |
| TC | Rep_490_c_2 | Rep_490_c_2_1802 | 2314178 | 2315020 | + | 1.A.30.1.3 |
| CAZyme | Rep_490_c_2 | Rep_490_c_2_1803 | 2315154 | 2317361 | - | GH92 |
| CAZyme | Rep_490_c_2 | Rep_490_c_2_1804 | 2317408 | 2319564 | - | GH36 |
| CAZyme | Rep_490_c_2 | Rep_490_c_2_1805 | 2319589 | 2321535 | - | CE20 | CE20 |
| CAZyme | Rep_490_c_2 | Rep_490_c_2_1806 | 2321544 | 2323565 | - | GH36 |
| TF | Rep_490_c_2 | Rep_490_c_2_1807 | 2323743 | 2327786 | - | HTH_AraC |
| CAZyme | Rep_490_c_2 | Rep_490_c_2_1808 | 2327954 | 2330380 | + | GH95 |
| NULL(UNKNOWN) | Rep_490_c_2 | Rep_490_c_2_1809 | 2330448 | 2331245 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_490_c_2 | Rep_490_c_2_1810 | 2331553 | 2334714 | + | 1.B.14.6.1 |
Gene ID: Rep_490_c_2_1798
Type: CAZyme
Location: 2306898 - 2308337 (-)
Type: CAZyme
Location: 2306898 - 2308337 (-)
Gene ID: Rep_490_c_2_1799
Type: pfam
Location: 2309483 - 2312317 (+)
Type: pfam
Location: 2309483 - 2312317 (+)
Gene ID: Rep_490_c_2_1800
Type: TC
Location: 2312469 - 2313386 (+)
Type: TC
Location: 2312469 - 2313386 (+)
Gene ID: Rep_490_c_2_1801
Type: sulfatase
Location: 2313435 - 2314016 (+)
Type: sulfatase
Location: 2313435 - 2314016 (+)
Gene ID: Rep_490_c_2_1802
Type: TC
Location: 2314178 - 2315020 (+)
Type: TC
Location: 2314178 - 2315020 (+)
Gene ID: Rep_490_c_2_1803
Type: CAZyme
Location: 2315154 - 2317361 (-)
Type: CAZyme
Location: 2315154 - 2317361 (-)
Gene ID: Rep_490_c_2_1804
Type: CAZyme
Location: 2317408 - 2319564 (-)
Type: CAZyme
Location: 2317408 - 2319564 (-)
Gene ID: Rep_490_c_2_1805
Type: CAZyme
Location: 2319589 - 2321535 (-)
Type: CAZyme
Location: 2319589 - 2321535 (-)
Gene ID: Rep_490_c_2_1806
Type: CAZyme
Location: 2321544 - 2323565 (-)
Type: CAZyme
Location: 2321544 - 2323565 (-)
Gene ID: Rep_490_c_2_1807
Type: TF
Location: 2323743 - 2327786 (-)
Type: TF
Location: 2323743 - 2327786 (-)
Gene ID: Rep_490_c_2_1808
Type: CAZyme
Location: 2327954 - 2330380 (+)
Type: CAZyme
Location: 2327954 - 2330380 (+)
Gene ID: Rep_490_c_2_1809
Type:
Location: 2330448 - 2331245 (+)
Type:
Location: 2330448 - 2331245 (+)
Gene ID: Rep_490_c_2_1810
Type: TC
Location: 2331553 - 2334714 (+)
Type: TC
Location: 2331553 - 2334714 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides thetaiotaomicron
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.