Cluster: Rep_490_CGC30
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 6
- Substrate: alpha-glucan
- Genome ID: Rep_490
- CGC Family ID: CGCFAM_00043
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_490_c_2 | Rep_490_c_2_1762 | 2243874 | 2246012 | + | GH31_14 |
| CAZyme | Rep_490_c_2 | Rep_490_c_2_1763 | 2246353 | 2248857 | - | GH31 |
| CAZyme | Rep_490_c_2 | Rep_490_c_2_1764 | 2248892 | 2250670 | - | GH66 |
| pfam | Rep_490_c_2 | Rep_490_c_2_1765 | 2250684 | 2252177 | - | SusE | SusF_SusE | SusF_SusE |
| TC | Rep_490_c_2 | Rep_490_c_2_1766 | 2252235 | 2253725 | - | 8.A.46.1.5 |
| TC | Rep_490_c_2 | Rep_490_c_2_1767 | 2253741 | 2256740 | - | 1.B.14.6.1 |
| pfam | Rep_490_c_2 | Rep_490_c_2_1768 | 2256928 | 2258580 | - | DUF6377 |
| CAZyme | Rep_490_c_2 | Rep_490_c_2_1769 | 2258681 | 2260885 | - | GH2 |
| sulfatase | Rep_490_c_2 | Rep_490_c_2_1770 | 2260919 | 2262586 | - | S1_4 |
| CAZyme | Rep_490_c_2 | Rep_490_c_2_1771 | 2262583 | 2263713 | - | GH43 |
| sulfatase | Rep_490_c_2 | Rep_490_c_2_1772 | 2263819 | 2265375 | - | S1_67 |
| CAZyme | Rep_490_c_2 | Rep_490_c_2_1773 | 2265383 | 2267428 | - | GH51_2 |
Gene ID: Rep_490_c_2_1762
Type: CAZyme
Location: 2243874 - 2246012 (+)
Type: CAZyme
Location: 2243874 - 2246012 (+)
Gene ID: Rep_490_c_2_1763
Type: CAZyme
Location: 2246353 - 2248857 (-)
Type: CAZyme
Location: 2246353 - 2248857 (-)
Gene ID: Rep_490_c_2_1764
Type: CAZyme
Location: 2248892 - 2250670 (-)
Type: CAZyme
Location: 2248892 - 2250670 (-)
Gene ID: Rep_490_c_2_1765
Type: pfam
Location: 2250684 - 2252177 (-)
Type: pfam
Location: 2250684 - 2252177 (-)
Gene ID: Rep_490_c_2_1766
Type: TC
Location: 2252235 - 2253725 (-)
Type: TC
Location: 2252235 - 2253725 (-)
Gene ID: Rep_490_c_2_1767
Type: TC
Location: 2253741 - 2256740 (-)
Type: TC
Location: 2253741 - 2256740 (-)
Gene ID: Rep_490_c_2_1768
Type: pfam
Location: 2256928 - 2258580 (-)
Type: pfam
Location: 2256928 - 2258580 (-)
Gene ID: Rep_490_c_2_1769
Type: CAZyme
Location: 2258681 - 2260885 (-)
Type: CAZyme
Location: 2258681 - 2260885 (-)
Gene ID: Rep_490_c_2_1770
Type: sulfatase
Location: 2260919 - 2262586 (-)
Type: sulfatase
Location: 2260919 - 2262586 (-)
Gene ID: Rep_490_c_2_1771
Type: CAZyme
Location: 2262583 - 2263713 (-)
Type: CAZyme
Location: 2262583 - 2263713 (-)
Gene ID: Rep_490_c_2_1772
Type: sulfatase
Location: 2263819 - 2265375 (-)
Type: sulfatase
Location: 2263819 - 2265375 (-)
Gene ID: Rep_490_c_2_1773
Type: CAZyme
Location: 2265383 - 2267428 (-)
Type: CAZyme
Location: 2265383 - 2267428 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides thetaiotaomicron
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.