Cluster: Rep_490_CGC28
🧬 Cluster Details
- Gene Count: 18
- CAZyme Count: 5
- Substrate:
- Genome ID: Rep_490
- CGC Family ID: CGCFAM_03881
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_490_c_2 | Rep_490_c_2_1686 | 2132539 | 2135925 | + | 1.B.14.6.1 |
| pfam | Rep_490_c_2 | Rep_490_c_2_1687 | 2135938 | 2137872 | + | SusD_RagB | SusD-like_3 |
| CAZyme | Rep_490_c_2 | Rep_490_c_2_1688 | 2137910 | 2138806 | + | CBM32 |
| CAZyme | Rep_490_c_2 | Rep_490_c_2_1689 | 2138816 | 2141722 | + | CBM32 |
| TC | Rep_490_c_2 | Rep_490_c_2_1690 | 2141909 | 2144725 | + | 1.B.14.12.1 |
| pfam | Rep_490_c_2 | Rep_490_c_2_1691 | 2144893 | 2145825 | + | Metallophos |
| TC | Rep_490_c_2 | Rep_490_c_2_1692 | 2145982 | 2147892 | - | 1.A.23.1.4 |
| TC | Rep_490_c_2 | Rep_490_c_2_1693 | 2147959 | 2148945 | + | 2.A.19.5.2 |
| pfam | Rep_490_c_2 | Rep_490_c_2_1694 | 2149027 | 2150595 | - | DUF4832 | DUF4874 |
| CAZyme | Rep_490_c_2 | Rep_490_c_2_1695 | 2150818 | 2152065 | + | GH154 |
| pfam | Rep_490_c_2 | Rep_490_c_2_1696 | 2152720 | 2153637 | + | Sulfatase | Phosphodiest | Metalloenzyme |
| pfam | Rep_490_c_2 | Rep_490_c_2_1697 | 2153752 | 2154963 | - | AAA_14 | DUF4143 |
| TC | Rep_490_c_2 | Rep_490_c_2_1698 | 2155249 | 2158314 | + | 1.B.14.6.1 |
| TC | Rep_490_c_2 | Rep_490_c_2_1699 | 2158349 | 2159980 | + | 8.A.46.1.3 |
| CAZyme | Rep_490_c_2 | Rep_490_c_2_1700 | 2160011 | 2161573 | + | GH30_6 |
| NULL(UNKNOWN) | Rep_490_c_2 | Rep_490_c_2_1701 | 2161597 | 2162778 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_490_c_2 | Rep_490_c_2_1702 | 2162963 | 2164153 | + | GH130_1 |
| TC | Rep_490_c_2 | Rep_490_c_2_1703 | 2164404 | 2166281 | + | 2.A.21.3.8 |
Gene ID: Rep_490_c_2_1686
Type: TC
Location: 2132539 - 2135925 (+)
Type: TC
Location: 2132539 - 2135925 (+)
Gene ID: Rep_490_c_2_1687
Type: pfam
Location: 2135938 - 2137872 (+)
Type: pfam
Location: 2135938 - 2137872 (+)
Gene ID: Rep_490_c_2_1688
Type: CAZyme
Location: 2137910 - 2138806 (+)
Type: CAZyme
Location: 2137910 - 2138806 (+)
Gene ID: Rep_490_c_2_1689
Type: CAZyme
Location: 2138816 - 2141722 (+)
Type: CAZyme
Location: 2138816 - 2141722 (+)
Gene ID: Rep_490_c_2_1690
Type: TC
Location: 2141909 - 2144725 (+)
Type: TC
Location: 2141909 - 2144725 (+)
Gene ID: Rep_490_c_2_1691
Type: pfam
Location: 2144893 - 2145825 (+)
Type: pfam
Location: 2144893 - 2145825 (+)
Gene ID: Rep_490_c_2_1692
Type: TC
Location: 2145982 - 2147892 (-)
Type: TC
Location: 2145982 - 2147892 (-)
Gene ID: Rep_490_c_2_1693
Type: TC
Location: 2147959 - 2148945 (+)
Type: TC
Location: 2147959 - 2148945 (+)
Gene ID: Rep_490_c_2_1694
Type: pfam
Location: 2149027 - 2150595 (-)
Type: pfam
Location: 2149027 - 2150595 (-)
Gene ID: Rep_490_c_2_1695
Type: CAZyme
Location: 2150818 - 2152065 (+)
Type: CAZyme
Location: 2150818 - 2152065 (+)
Gene ID: Rep_490_c_2_1696
Type: pfam
Location: 2152720 - 2153637 (+)
Type: pfam
Location: 2152720 - 2153637 (+)
Gene ID: Rep_490_c_2_1697
Type: pfam
Location: 2153752 - 2154963 (-)
Type: pfam
Location: 2153752 - 2154963 (-)
Gene ID: Rep_490_c_2_1698
Type: TC
Location: 2155249 - 2158314 (+)
Type: TC
Location: 2155249 - 2158314 (+)
Gene ID: Rep_490_c_2_1699
Type: TC
Location: 2158349 - 2159980 (+)
Type: TC
Location: 2158349 - 2159980 (+)
Gene ID: Rep_490_c_2_1700
Type: CAZyme
Location: 2160011 - 2161573 (+)
Type: CAZyme
Location: 2160011 - 2161573 (+)
Gene ID: Rep_490_c_2_1701
Type:
Location: 2161597 - 2162778 (+)
Type:
Location: 2161597 - 2162778 (+)
Gene ID: Rep_490_c_2_1702
Type: CAZyme
Location: 2162963 - 2164153 (+)
Type: CAZyme
Location: 2162963 - 2164153 (+)
Gene ID: Rep_490_c_2_1703
Type: TC
Location: 2164404 - 2166281 (+)
Type: TC
Location: 2164404 - 2166281 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides thetaiotaomicron
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.