Cluster: Rep_490_CGC26
🧬 Cluster Details
- Gene Count: 17
- CAZyme Count: 9
- Substrate:
- Genome ID: Rep_490
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_490_c_2 | Rep_490_c_2_1634 | 2057581 | 2058780 | + | GT4 |
| CAZyme | Rep_490_c_2 | Rep_490_c_2_1635 | 2058777 | 2059910 | + | GT4 |
| CAZyme | Rep_490_c_2 | Rep_490_c_2_1636 | 2059907 | 2061133 | + | GT4 |
| TF | Rep_490_c_2 | Rep_490_c_2_1637 | 2061105 | 2062016 | - | 0035607 |
| TC | Rep_490_c_2 | Rep_490_c_2_1638 | 2062240 | 2063343 | + | 2.A.6.2.29 |
| TC | Rep_490_c_2 | Rep_490_c_2_1639 | 2063358 | 2066534 | + | 2.A.6.2.22 |
| TC | Rep_490_c_2 | Rep_490_c_2_1640 | 2066550 | 2067914 | + | 2.A.6.2.23 |
| pfam | Rep_490_c_2 | Rep_490_c_2_1641 | 2068172 | 2069299 | - | Epimerase_2 |
| pfam | Rep_490_c_2 | Rep_490_c_2_1642 | 2069350 | 2070552 | - | UDPG_MGDP_dh | NAD_binding_2 | UDPG_MGDP_dh_C | UDPG_MGDP_dh_N |
| CAZyme | Rep_490_c_2 | Rep_490_c_2_1643 | 2070658 | 2071923 | + | GT4 |
| CAZyme | Rep_490_c_2 | Rep_490_c_2_1644 | 2071916 | 2072671 | + | GT2 |
| CAZyme | Rep_490_c_2 | Rep_490_c_2_1645 | 2072732 | 2075083 | - | GH115 |
| CAZyme | Rep_490_c_2 | Rep_490_c_2_1646 | 2075089 | 2076471 | - | GH43_24 |
| NULL(UNKNOWN) | Rep_490_c_2 | Rep_490_c_2_1647 | 2076715 | 2076939 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | Rep_490_c_2 | Rep_490_c_2_1648 | 2077235 | 2078092 | - | Lipase_GDSL | Lipase_GDSL_2 |
| CAZyme | Rep_490_c_2 | Rep_490_c_2_1649 | 2078358 | 2081300 | - | GH105 | PL33_2 |
| CAZyme | Rep_490_c_2 | Rep_490_c_2_1650 | 2081297 | 2083456 | - | PL8_3 |
Gene ID: Rep_490_c_2_1634
Type: CAZyme
Location: 2057581 - 2058780 (+)
Type: CAZyme
Location: 2057581 - 2058780 (+)
Gene ID: Rep_490_c_2_1635
Type: CAZyme
Location: 2058777 - 2059910 (+)
Type: CAZyme
Location: 2058777 - 2059910 (+)
Gene ID: Rep_490_c_2_1636
Type: CAZyme
Location: 2059907 - 2061133 (+)
Type: CAZyme
Location: 2059907 - 2061133 (+)
Gene ID: Rep_490_c_2_1637
Type: TF
Location: 2061105 - 2062016 (-)
Type: TF
Location: 2061105 - 2062016 (-)
Gene ID: Rep_490_c_2_1638
Type: TC
Location: 2062240 - 2063343 (+)
Type: TC
Location: 2062240 - 2063343 (+)
Gene ID: Rep_490_c_2_1639
Type: TC
Location: 2063358 - 2066534 (+)
Type: TC
Location: 2063358 - 2066534 (+)
Gene ID: Rep_490_c_2_1640
Type: TC
Location: 2066550 - 2067914 (+)
Type: TC
Location: 2066550 - 2067914 (+)
Gene ID: Rep_490_c_2_1641
Type: pfam
Location: 2068172 - 2069299 (-)
Type: pfam
Location: 2068172 - 2069299 (-)
Gene ID: Rep_490_c_2_1642
Type: pfam
Location: 2069350 - 2070552 (-)
Type: pfam
Location: 2069350 - 2070552 (-)
Gene ID: Rep_490_c_2_1643
Type: CAZyme
Location: 2070658 - 2071923 (+)
Type: CAZyme
Location: 2070658 - 2071923 (+)
Gene ID: Rep_490_c_2_1644
Type: CAZyme
Location: 2071916 - 2072671 (+)
Type: CAZyme
Location: 2071916 - 2072671 (+)
Gene ID: Rep_490_c_2_1645
Type: CAZyme
Location: 2072732 - 2075083 (-)
Type: CAZyme
Location: 2072732 - 2075083 (-)
Gene ID: Rep_490_c_2_1646
Type: CAZyme
Location: 2075089 - 2076471 (-)
Type: CAZyme
Location: 2075089 - 2076471 (-)
Gene ID: Rep_490_c_2_1647
Type:
Location: 2076715 - 2076939 (+)
Type:
Location: 2076715 - 2076939 (+)
Gene ID: Rep_490_c_2_1648
Type: pfam
Location: 2077235 - 2078092 (-)
Type: pfam
Location: 2077235 - 2078092 (-)
Gene ID: Rep_490_c_2_1649
Type: CAZyme
Location: 2078358 - 2081300 (-)
Type: CAZyme
Location: 2078358 - 2081300 (-)
Gene ID: Rep_490_c_2_1650
Type: CAZyme
Location: 2081297 - 2083456 (-)
Type: CAZyme
Location: 2081297 - 2083456 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides thetaiotaomicron
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.