Cluster: Rep_490_CGC24
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 3
- Substrate:
- Genome ID: Rep_490
- CGC Family ID: CGCFAM_10935
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_490_c_2 | Rep_490_c_2_1574 | 1970232 | 1973435 | - | 1.B.14.6.1 |
| sulfatase | Rep_490_c_2 | Rep_490_c_2_1575 | 1973463 | 1974773 | - | S1_7 |
| sulfatase | Rep_490_c_2 | Rep_490_c_2_1576 | 1974808 | 1976166 | - | S1_7 |
| CAZyme | Rep_490_c_2 | Rep_490_c_2_1577 | 1976221 | 1978767 | - | GH116 |
| pfam | Rep_490_c_2 | Rep_490_c_2_1578 | 1978786 | 1980210 | - | Arabinose_Iso_C | AraA_central |
| TF | Rep_490_c_2 | Rep_490_c_2_1579 | 1980293 | 1981174 | - | HTH_AraC | HTH_AraC |
| CAZyme | Rep_490_c_2 | Rep_490_c_2_1580 | 1981519 | 1983486 | - | GH146 |
| CAZyme | Rep_490_c_2 | Rep_490_c_2_1581 | 1983498 | 1988132 | - | GH106 | GH43_26 |
| TC | Rep_490_c_2 | Rep_490_c_2_1582 | 1988798 | 1990540 | - | 3.A.1.21.1 |
| TC | Rep_490_c_2 | Rep_490_c_2_1583 | 1990547 | 1992343 | - | 3.A.1.21.1 |
Gene ID: Rep_490_c_2_1574
Type: TC
Location: 1970232 - 1973435 (-)
Type: TC
Location: 1970232 - 1973435 (-)
Gene ID: Rep_490_c_2_1575
Type: sulfatase
Location: 1973463 - 1974773 (-)
Type: sulfatase
Location: 1973463 - 1974773 (-)
Gene ID: Rep_490_c_2_1576
Type: sulfatase
Location: 1974808 - 1976166 (-)
Type: sulfatase
Location: 1974808 - 1976166 (-)
Gene ID: Rep_490_c_2_1577
Type: CAZyme
Location: 1976221 - 1978767 (-)
Type: CAZyme
Location: 1976221 - 1978767 (-)
Gene ID: Rep_490_c_2_1578
Type: pfam
Location: 1978786 - 1980210 (-)
Type: pfam
Location: 1978786 - 1980210 (-)
Gene ID: Rep_490_c_2_1579
Type: TF
Location: 1980293 - 1981174 (-)
Type: TF
Location: 1980293 - 1981174 (-)
Gene ID: Rep_490_c_2_1580
Type: CAZyme
Location: 1981519 - 1983486 (-)
Type: CAZyme
Location: 1981519 - 1983486 (-)
Gene ID: Rep_490_c_2_1581
Type: CAZyme
Location: 1983498 - 1988132 (-)
Type: CAZyme
Location: 1983498 - 1988132 (-)
Gene ID: Rep_490_c_2_1582
Type: TC
Location: 1988798 - 1990540 (-)
Type: TC
Location: 1988798 - 1990540 (-)
Gene ID: Rep_490_c_2_1583
Type: TC
Location: 1990547 - 1992343 (-)
Type: TC
Location: 1990547 - 1992343 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides thetaiotaomicron
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.