Cluster: Rep_490_CGC23
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 6
- Substrate: host glycan
- Genome ID: Rep_490
- CGC Family ID: CGCFAM_00109
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_490_c_2 | Rep_490_c_2_1557 | 1941320 | 1942432 | - | 9.B.146.1.4 |
| STP | Rep_490_c_2 | Rep_490_c_2_1558 | 1942837 | 1943721 | + | HTH_18 |
| pfam | Rep_490_c_2 | Rep_490_c_2_1559 | 1943920 | 1945149 | - | Phage_integrase | Phage_int_SAM_5 |
| CAZyme | Rep_490_c_2 | Rep_490_c_2_1560 | 1946135 | 1947847 | - | GH93 |
| pfam | Rep_490_c_2 | Rep_490_c_2_1561 | 1947926 | 1949800 | - | SusD_RagB | SusD-like_3 |
| TC | Rep_490_c_2 | Rep_490_c_2_1562 | 1949809 | 1952883 | - | 1.B.14.6.1 |
| CAZyme | Rep_490_c_2 | Rep_490_c_2_1563 | 1952934 | 1953926 | - | GH43_31 |
| pfam | Rep_490_c_2 | Rep_490_c_2_1564 | 1953972 | 1955330 | - | NHL | TIG | SGL |
| TF | Rep_490_c_2 | Rep_490_c_2_1565 | 1955816 | 1959796 | - | HTH_AraC |
| CAZyme | Rep_490_c_2 | Rep_490_c_2_1566 | 1960431 | 1961414 | - | GH43_31 |
| CAZyme | Rep_490_c_2 | Rep_490_c_2_1567 | 1961436 | 1963502 | - | GH182 |
| NULL(UNKNOWN) | Rep_490_c_2 | Rep_490_c_2_1568 | 1963573 | 1963716 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_490_c_2 | Rep_490_c_2_1569 | 1963729 | 1964706 | - | GH43_3 |
| CAZyme | Rep_490_c_2 | Rep_490_c_2_1570 | 1964842 | 1965867 | - | GH159 |
Gene ID: Rep_490_c_2_1557
Type: TC
Location: 1941320 - 1942432 (-)
Type: TC
Location: 1941320 - 1942432 (-)
Gene ID: Rep_490_c_2_1558
Type: STP
Location: 1942837 - 1943721 (+)
Type: STP
Location: 1942837 - 1943721 (+)
Gene ID: Rep_490_c_2_1559
Type: pfam
Location: 1943920 - 1945149 (-)
Type: pfam
Location: 1943920 - 1945149 (-)
Gene ID: Rep_490_c_2_1560
Type: CAZyme
Location: 1946135 - 1947847 (-)
Type: CAZyme
Location: 1946135 - 1947847 (-)
Gene ID: Rep_490_c_2_1561
Type: pfam
Location: 1947926 - 1949800 (-)
Type: pfam
Location: 1947926 - 1949800 (-)
Gene ID: Rep_490_c_2_1562
Type: TC
Location: 1949809 - 1952883 (-)
Type: TC
Location: 1949809 - 1952883 (-)
Gene ID: Rep_490_c_2_1563
Type: CAZyme
Location: 1952934 - 1953926 (-)
Type: CAZyme
Location: 1952934 - 1953926 (-)
Gene ID: Rep_490_c_2_1564
Type: pfam
Location: 1953972 - 1955330 (-)
Type: pfam
Location: 1953972 - 1955330 (-)
Gene ID: Rep_490_c_2_1565
Type: TF
Location: 1955816 - 1959796 (-)
Type: TF
Location: 1955816 - 1959796 (-)
Gene ID: Rep_490_c_2_1566
Type: CAZyme
Location: 1960431 - 1961414 (-)
Type: CAZyme
Location: 1960431 - 1961414 (-)
Gene ID: Rep_490_c_2_1567
Type: CAZyme
Location: 1961436 - 1963502 (-)
Type: CAZyme
Location: 1961436 - 1963502 (-)
Gene ID: Rep_490_c_2_1568
Type:
Location: 1963573 - 1963716 (+)
Type:
Location: 1963573 - 1963716 (+)
Gene ID: Rep_490_c_2_1569
Type: CAZyme
Location: 1963729 - 1964706 (-)
Type: CAZyme
Location: 1963729 - 1964706 (-)
Gene ID: Rep_490_c_2_1570
Type: CAZyme
Location: 1964842 - 1965867 (-)
Type: CAZyme
Location: 1964842 - 1965867 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides thetaiotaomicron
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.