Cluster: Rep_490_CGC16
🧬 Cluster Details
- Gene Count: 19
- CAZyme Count: 6
- Substrate:
- Genome ID: Rep_490
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_490_c_2 | Rep_490_c_2_1022 | 1248763 | 1251291 | - | GH31_5 |
| pfam | Rep_490_c_2 | Rep_490_c_2_1023 | 1251316 | 1252923 | - | Alginate_lyase |
| CAZyme | Rep_490_c_2 | Rep_490_c_2_1024 | 1252937 | 1254325 | - | GH43_34 |
| TF | Rep_490_c_2 | Rep_490_c_2_1025 | 1254566 | 1258600 | + | HTH_AraC | HTH_AraC |
| peptidase | Rep_490_c_2 | Rep_490_c_2_1026 | 1258687 | 1260744 | + | I39.UPW |
| CAZyme | Rep_490_c_2 | Rep_490_c_2_1027 | 1260892 | 1262328 | - | CBM32 |
| pfam | Rep_490_c_2 | Rep_490_c_2_1028 | 1262355 | 1264292 | - | SusD_RagB | SusD-like_3 |
| TC | Rep_490_c_2 | Rep_490_c_2_1029 | 1264304 | 1267387 | - | 1.B.14.6.1 |
| pfam | Rep_490_c_2 | Rep_490_c_2_1030 | 1267406 | 1269259 | - | SusD_RagB | SusD-like_3 |
| TC | Rep_490_c_2 | Rep_490_c_2_1031 | 1269263 | 1272265 | - | 1.B.14.6.2 |
| TF | Rep_490_c_2 | Rep_490_c_2_1032 | 1272471 | 1272986 | - | HTH_5 |
| CAZyme | Rep_490_c_2 | Rep_490_c_2_1033 | 1273099 | 1274829 | - | GH97 |
| NULL(UNKNOWN) | Rep_490_c_2 | Rep_490_c_2_1034 | 1274881 | 1275027 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_490_c_2 | Rep_490_c_2_1035 | 1275081 | 1276469 | - | GH28 |
| CAZyme | Rep_490_c_2 | Rep_490_c_2_1036 | 1277152 | 1279089 | + | GH28 |
| TC | Rep_490_c_2 | Rep_490_c_2_1037 | 1279474 | 1282551 | + | 1.B.14.6.1 |
| pfam | Rep_490_c_2 | Rep_490_c_2_1038 | 1282585 | 1284078 | + | SusD_RagB | SusD-like_3 |
| STP | Rep_490_c_2 | Rep_490_c_2_1039 | 1284340 | 1284903 | + | cNMP_binding |
| TC | Rep_490_c_2 | Rep_490_c_2_1040 | 1285013 | 1286161 | + | 9.B.97.3.1 |
Gene ID: Rep_490_c_2_1022
Type: CAZyme
Location: 1248763 - 1251291 (-)
Type: CAZyme
Location: 1248763 - 1251291 (-)
Gene ID: Rep_490_c_2_1023
Type: pfam
Location: 1251316 - 1252923 (-)
Type: pfam
Location: 1251316 - 1252923 (-)
Gene ID: Rep_490_c_2_1024
Type: CAZyme
Location: 1252937 - 1254325 (-)
Type: CAZyme
Location: 1252937 - 1254325 (-)
Gene ID: Rep_490_c_2_1025
Type: TF
Location: 1254566 - 1258600 (+)
Type: TF
Location: 1254566 - 1258600 (+)
Gene ID: Rep_490_c_2_1026
Type: peptidase
Location: 1258687 - 1260744 (+)
Type: peptidase
Location: 1258687 - 1260744 (+)
Gene ID: Rep_490_c_2_1027
Type: CAZyme
Location: 1260892 - 1262328 (-)
Type: CAZyme
Location: 1260892 - 1262328 (-)
Gene ID: Rep_490_c_2_1028
Type: pfam
Location: 1262355 - 1264292 (-)
Type: pfam
Location: 1262355 - 1264292 (-)
Gene ID: Rep_490_c_2_1029
Type: TC
Location: 1264304 - 1267387 (-)
Type: TC
Location: 1264304 - 1267387 (-)
Gene ID: Rep_490_c_2_1030
Type: pfam
Location: 1267406 - 1269259 (-)
Type: pfam
Location: 1267406 - 1269259 (-)
Gene ID: Rep_490_c_2_1031
Type: TC
Location: 1269263 - 1272265 (-)
Type: TC
Location: 1269263 - 1272265 (-)
Gene ID: Rep_490_c_2_1032
Type: TF
Location: 1272471 - 1272986 (-)
Type: TF
Location: 1272471 - 1272986 (-)
Gene ID: Rep_490_c_2_1033
Type: CAZyme
Location: 1273099 - 1274829 (-)
Type: CAZyme
Location: 1273099 - 1274829 (-)
Gene ID: Rep_490_c_2_1034
Type:
Location: 1274881 - 1275027 (+)
Type:
Location: 1274881 - 1275027 (+)
Gene ID: Rep_490_c_2_1035
Type: CAZyme
Location: 1275081 - 1276469 (-)
Type: CAZyme
Location: 1275081 - 1276469 (-)
Gene ID: Rep_490_c_2_1036
Type: CAZyme
Location: 1277152 - 1279089 (+)
Type: CAZyme
Location: 1277152 - 1279089 (+)
Gene ID: Rep_490_c_2_1037
Type: TC
Location: 1279474 - 1282551 (+)
Type: TC
Location: 1279474 - 1282551 (+)
Gene ID: Rep_490_c_2_1038
Type: pfam
Location: 1282585 - 1284078 (+)
Type: pfam
Location: 1282585 - 1284078 (+)
Gene ID: Rep_490_c_2_1039
Type: STP
Location: 1284340 - 1284903 (+)
Type: STP
Location: 1284340 - 1284903 (+)
Gene ID: Rep_490_c_2_1040
Type: TC
Location: 1285013 - 1286161 (+)
Type: TC
Location: 1285013 - 1286161 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides thetaiotaomicron
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.