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Cluster: Rep_490_CGC15

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_490_c_2 Rep_490_c_2_948 1162862 1166002 - 1.B.14.6.1
TC Rep_490_c_2 Rep_490_c_2_949 1166075 1168399 - 3.A.1.132.9
TC Rep_490_c_2 Rep_490_c_2_950 1168427 1169350 - 3.A.1.132.9
TC Rep_490_c_2 Rep_490_c_2_951 1169383 1171677 - 3.A.1.132.9
TC Rep_490_c_2 Rep_490_c_2_952 1171703 1172641 - 3.A.1.132.9
TC Rep_490_c_2 Rep_490_c_2_953 1173196 1174278 + 2.A.6.2.28
TC Rep_490_c_2 Rep_490_c_2_954 1174294 1177326 + 2.A.6.2.33
pfam Rep_490_c_2 Rep_490_c_2_955 1177323 1178669 + OEP | OEP
CAZyme Rep_490_c_2 Rep_490_c_2_956 1178820 1179914 + PL10_1
Gene ID: Rep_490_c_2_948
Type: TC
Location: 1162862 - 1166002 (-)
Gene ID: Rep_490_c_2_949
Type: TC
Location: 1166075 - 1168399 (-)
Gene ID: Rep_490_c_2_950
Type: TC
Location: 1168427 - 1169350 (-)
Gene ID: Rep_490_c_2_951
Type: TC
Location: 1169383 - 1171677 (-)
Gene ID: Rep_490_c_2_952
Type: TC
Location: 1171703 - 1172641 (-)
Gene ID: Rep_490_c_2_953
Type: TC
Location: 1173196 - 1174278 (+)
Gene ID: Rep_490_c_2_954
Type: TC
Location: 1174294 - 1177326 (+)
Gene ID: Rep_490_c_2_955
Type: pfam
Location: 1177323 - 1178669 (+)
Gene ID: Rep_490_c_2_956
Type: CAZyme
Location: 1178820 - 1179914 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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