Cluster: Rep_490_CGC14
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 4
- Substrate:
- Genome ID: Rep_490
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_490_c_2 | Rep_490_c_2_894 | 1095795 | 1099379 | - | GH2 |
| CAZyme | Rep_490_c_2 | Rep_490_c_2_895 | 1099398 | 1100852 | - | GH29 |
| pfam | Rep_490_c_2 | Rep_490_c_2_896 | 1100879 | 1102552 | - | GxGYxYP_C | GxGYxYP_N | GxGYxYP_N_2nd | GxGYxYP_N_3rd |
| CAZyme | Rep_490_c_2 | Rep_490_c_2_897 | 1102570 | 1103520 | - | CBM32 |
| TC | Rep_490_c_2 | Rep_490_c_2_898 | 1103573 | 1105315 | - | 8.A.46.1.4 |
| TC | Rep_490_c_2 | Rep_490_c_2_899 | 1105344 | 1108706 | - | 1.B.14.6.1 |
| STP | Rep_490_c_2 | Rep_490_c_2_900 | 1108903 | 1109868 | - | FecR |
| TF | Rep_490_c_2 | Rep_490_c_2_901 | 1110020 | 1110601 | - | GerE |
| CAZyme | Rep_490_c_2 | Rep_490_c_2_902 | 1110750 | 1113026 | - | GH92 |
| pfam | Rep_490_c_2 | Rep_490_c_2_903 | 1113130 | 1115034 | - | GxGYxYP_C | GxGYxYP_N_3rd |
| pfam | Rep_490_c_2 | Rep_490_c_2_904 | 1115053 | 1116696 | - | SusD_RagB | SusD-like_3 |
| TC | Rep_490_c_2 | Rep_490_c_2_905 | 1116711 | 1119701 | - | 1.B.14.6.1 |
Gene ID: Rep_490_c_2_894
Type: CAZyme
Location: 1095795 - 1099379 (-)
Type: CAZyme
Location: 1095795 - 1099379 (-)
Gene ID: Rep_490_c_2_895
Type: CAZyme
Location: 1099398 - 1100852 (-)
Type: CAZyme
Location: 1099398 - 1100852 (-)
Gene ID: Rep_490_c_2_896
Type: pfam
Location: 1100879 - 1102552 (-)
Type: pfam
Location: 1100879 - 1102552 (-)
Gene ID: Rep_490_c_2_897
Type: CAZyme
Location: 1102570 - 1103520 (-)
Type: CAZyme
Location: 1102570 - 1103520 (-)
Gene ID: Rep_490_c_2_898
Type: TC
Location: 1103573 - 1105315 (-)
Type: TC
Location: 1103573 - 1105315 (-)
Gene ID: Rep_490_c_2_899
Type: TC
Location: 1105344 - 1108706 (-)
Type: TC
Location: 1105344 - 1108706 (-)
Gene ID: Rep_490_c_2_900
Type: STP
Location: 1108903 - 1109868 (-)
Type: STP
Location: 1108903 - 1109868 (-)
Gene ID: Rep_490_c_2_901
Type: TF
Location: 1110020 - 1110601 (-)
Type: TF
Location: 1110020 - 1110601 (-)
Gene ID: Rep_490_c_2_902
Type: CAZyme
Location: 1110750 - 1113026 (-)
Type: CAZyme
Location: 1110750 - 1113026 (-)
Gene ID: Rep_490_c_2_903
Type: pfam
Location: 1113130 - 1115034 (-)
Type: pfam
Location: 1113130 - 1115034 (-)
Gene ID: Rep_490_c_2_904
Type: pfam
Location: 1115053 - 1116696 (-)
Type: pfam
Location: 1115053 - 1116696 (-)
Gene ID: Rep_490_c_2_905
Type: TC
Location: 1116711 - 1119701 (-)
Type: TC
Location: 1116711 - 1119701 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides thetaiotaomicron
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.