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Cluster: Rep_490_CGC105

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_490_c_5 Rep_490_c_5_1 205 1371 + CE9
CAZyme Rep_490_c_5 Rep_490_c_5_2 1390 2562 + CE9
pfam Rep_490_c_5 Rep_490_c_5_3 2684 3043 - Thioredoxin | Thioredoxin_2 | TraF | Thioredoxin_8
TC Rep_490_c_5 Rep_490_c_5_4 3277 4539 + 2.A.6.1.5
pfam Rep_490_c_5 Rep_490_c_5_5 4595 5689 + OEP | HlyD_3 | Biotin_lipoyl_2 | HlyD_D23
TC Rep_490_c_5 Rep_490_c_5_6 5705 8830 + 2.A.6.1.17
STP Rep_490_c_5 Rep_490_c_5_7 8928 10259 - HATPase_c | HisKA
TF Rep_490_c_5 Rep_490_c_5_8 10283 10957 - Trans_reg_C
CAZyme Rep_490_c_5 Rep_490_c_5_9 11077 13092 + GH97
TC Rep_490_c_5 Rep_490_c_5_10 13273 14985 - 4.C.1.1.4
TC Rep_490_c_5 Rep_490_c_5_11 15256 16728 - 2.A.36.6.11
TC Rep_490_c_5 Rep_490_c_5_12 16897 18081 + 2.A.40.1.4
Gene ID: Rep_490_c_5_1
Type: CAZyme
Location: 205 - 1371 (+)
Gene ID: Rep_490_c_5_2
Type: CAZyme
Location: 1390 - 2562 (+)
Gene ID: Rep_490_c_5_3
Type: pfam
Location: 2684 - 3043 (-)
Gene ID: Rep_490_c_5_4
Type: TC
Location: 3277 - 4539 (+)
Gene ID: Rep_490_c_5_5
Type: pfam
Location: 4595 - 5689 (+)
Gene ID: Rep_490_c_5_6
Type: TC
Location: 5705 - 8830 (+)
Gene ID: Rep_490_c_5_7
Type: STP
Location: 8928 - 10259 (-)
Gene ID: Rep_490_c_5_8
Type: TF
Location: 10283 - 10957 (-)
Gene ID: Rep_490_c_5_9
Type: CAZyme
Location: 11077 - 13092 (+)
Gene ID: Rep_490_c_5_10
Type: TC
Location: 13273 - 14985 (-)
Gene ID: Rep_490_c_5_11
Type: TC
Location: 15256 - 16728 (-)
Gene ID: Rep_490_c_5_12
Type: TC
Location: 16897 - 18081 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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