Cluster: Rep_480_CGC81
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 3
- Substrate: pectin/host glycan
- Genome ID: Rep_480
- CGC Family ID: CGCFAM_00110
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_480_c_284 | Rep_480_c_284_13 | 14490 | 17270 | - | GH16_3 | GH29 |
| pfam | Rep_480_c_284 | Rep_480_c_284_14 | 17483 | 19057 | + | PDDEXK_9 | AAA-ATPase_like |
| CAZyme | Rep_480_c_284 | Rep_480_c_284_15 | 19069 | 22122 | - | GH2 |
| CAZyme | Rep_480_c_284 | Rep_480_c_284_16 | 22144 | 24459 | - | GH20 |
| sulfatase | Rep_480_c_284 | Rep_480_c_284_17 | 24486 | 26069 | - | S1_11 |
| pfam | Rep_480_c_284 | Rep_480_c_284_18 | 26217 | 28034 | - | SusD_RagB | SusD-like_2 | SusD-like_3 |
| TC | Rep_480_c_284 | Rep_480_c_284_19 | 28055 | 31267 | - | 1.B.14.6.1 |
Gene ID: Rep_480_c_284_13
Type: CAZyme
Location: 14490 - 17270 (-)
Type: CAZyme
Location: 14490 - 17270 (-)
Gene ID: Rep_480_c_284_14
Type: pfam
Location: 17483 - 19057 (+)
Type: pfam
Location: 17483 - 19057 (+)
Gene ID: Rep_480_c_284_15
Type: CAZyme
Location: 19069 - 22122 (-)
Type: CAZyme
Location: 19069 - 22122 (-)
Gene ID: Rep_480_c_284_16
Type: CAZyme
Location: 22144 - 24459 (-)
Type: CAZyme
Location: 22144 - 24459 (-)
Gene ID: Rep_480_c_284_17
Type: sulfatase
Location: 24486 - 26069 (-)
Type: sulfatase
Location: 24486 - 26069 (-)
Gene ID: Rep_480_c_284_18
Type: pfam
Location: 26217 - 28034 (-)
Type: pfam
Location: 26217 - 28034 (-)
Gene ID: Rep_480_c_284_19
Type: TC
Location: 28055 - 31267 (-)
Type: TC
Location: 28055 - 31267 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.