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Cluster: Rep_480_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_480_c_25 Rep_480_c_25_1 110 1081 + GH130_2
CAZyme Rep_480_c_25 Rep_480_c_25_2 1271 3574 + GH92
TC Rep_480_c_25 Rep_480_c_25_3 3522 4811 - 2.A.21.9.2
peptidase Rep_480_c_25 Rep_480_c_25_4 5299 6183 - G04.UNW
peptidase Rep_480_c_25 Rep_480_c_25_5 6284 6796 - C40.004
TC Rep_480_c_25 Rep_480_c_25_6 6793 7572 - 3.A.1.147.2
Gene ID: Rep_480_c_25_1
Type: CAZyme
Location: 110 - 1081 (+)
Gene ID: Rep_480_c_25_2
Type: CAZyme
Location: 1271 - 3574 (+)
Gene ID: Rep_480_c_25_3
Type: TC
Location: 3522 - 4811 (-)
Gene ID: Rep_480_c_25_4
Type: peptidase
Location: 5299 - 6183 (-)
Gene ID: Rep_480_c_25_5
Type: peptidase
Location: 6284 - 6796 (-)
Gene ID: Rep_480_c_25_6
Type: TC
Location: 6793 - 7572 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Bacteroidaceae
→
Genus
Bacteroides
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_480_c_25_5 vegan > omnivore 1.28252 0.02669

🧭 Explore Read Mapping of CGC

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