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Cluster: Rep_480_CGC76

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_480_c_262 Rep_480_c_262_2 134 1777 - GH30_8
CAZyme Rep_480_c_262 Rep_480_c_262_3 1802 4015 - GH10
pfam Rep_480_c_262 Rep_480_c_262_4 4050 5084 - BT_3987-like_N | DUF5627
pfam Rep_480_c_262 Rep_480_c_262_5 5122 6879 - SusD_RagB | SusD-like_3
TC Rep_480_c_262 Rep_480_c_262_6 6908 9733 - 1.B.14.6.1
pfam Rep_480_c_262 Rep_480_c_262_7 9768 11645 - SusD_RagB | SusD-like_3
TC Rep_480_c_262 Rep_480_c_262_8 11662 14649 - 1.B.14.6.1
Gene ID: Rep_480_c_262_2
Type: CAZyme
Location: 134 - 1777 (-)
Gene ID: Rep_480_c_262_3
Type: CAZyme
Location: 1802 - 4015 (-)
Gene ID: Rep_480_c_262_4
Type: pfam
Location: 4050 - 5084 (-)
Gene ID: Rep_480_c_262_5
Type: pfam
Location: 5122 - 6879 (-)
Gene ID: Rep_480_c_262_6
Type: TC
Location: 6908 - 9733 (-)
Gene ID: Rep_480_c_262_7
Type: pfam
Location: 9768 - 11645 (-)
Gene ID: Rep_480_c_262_8
Type: TC
Location: 11662 - 14649 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Bacteroidaceae
→
Genus
Bacteroides
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_480_c_262_5 vegan > omnivore 2.98613 0.02669
Rep_480_c_262_6 vegan > omnivore 1.87248 0.02669
Rep_480_c_262_7 vegan > omnivore 3.65156 0.02669
Rep_480_c_262_7 vegetarian > omnivore 1.33070 0.02268
Rep_480_c_262_8 vegan > omnivore 1.56827 0.02669

🧭 Explore Read Mapping of CGC

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