Cluster: Rep_480_CGC73
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 3
- Substrate:
- Genome ID: Rep_480
- CGC Family ID: CGCFAM_00372
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_480_c_253 | Rep_480_c_253_9 | 8241 | 9494 | - | GH88 |
| pfam | Rep_480_c_253 | Rep_480_c_253_10 | 9560 | 11236 | - | DUF6562 |
| pfam | Rep_480_c_253 | Rep_480_c_253_11 | 11258 | 12994 | - | DUF6562 |
| CAZyme | Rep_480_c_253 | Rep_480_c_253_12 | 13049 | 15595 | - | PL15 |
| pfam | Rep_480_c_253 | Rep_480_c_253_13 | 15609 | 17291 | - | SusD_RagB | SusD-like_3 |
| TC | Rep_480_c_253 | Rep_480_c_253_14 | 17304 | 20282 | - | 1.B.14.6.1 |
| pfam | Rep_480_c_253 | Rep_480_c_253_15 | 20300 | 22063 | - | SusD_RagB | SusD-like_3 |
| TC | Rep_480_c_253 | Rep_480_c_253_16 | 22081 | 25320 | - | 1.B.14.6.1 |
| NULL(UNKNOWN) | Rep_480_c_253 | Rep_480_c_253_17 | 25540 | 25701 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_480_c_253 | Rep_480_c_253_18 | 25972 | 28470 | + | PL15_2 |
| pfam | Rep_480_c_253 | Rep_480_c_253_19 | 28554 | 30002 | - | OmpA | DUF3868 |
| TC | Rep_480_c_253 | Rep_480_c_253_20 | 30031 | 30618 | - | 9.B.171.1.2 |
Gene ID: Rep_480_c_253_9
Type: CAZyme
Location: 8241 - 9494 (-)
Type: CAZyme
Location: 8241 - 9494 (-)
Gene ID: Rep_480_c_253_10
Type: pfam
Location: 9560 - 11236 (-)
Type: pfam
Location: 9560 - 11236 (-)
Gene ID: Rep_480_c_253_11
Type: pfam
Location: 11258 - 12994 (-)
Type: pfam
Location: 11258 - 12994 (-)
Gene ID: Rep_480_c_253_12
Type: CAZyme
Location: 13049 - 15595 (-)
Type: CAZyme
Location: 13049 - 15595 (-)
Gene ID: Rep_480_c_253_13
Type: pfam
Location: 15609 - 17291 (-)
Type: pfam
Location: 15609 - 17291 (-)
Gene ID: Rep_480_c_253_14
Type: TC
Location: 17304 - 20282 (-)
Type: TC
Location: 17304 - 20282 (-)
Gene ID: Rep_480_c_253_15
Type: pfam
Location: 20300 - 22063 (-)
Type: pfam
Location: 20300 - 22063 (-)
Gene ID: Rep_480_c_253_16
Type: TC
Location: 22081 - 25320 (-)
Type: TC
Location: 22081 - 25320 (-)
Gene ID: Rep_480_c_253_17
Type:
Location: 25540 - 25701 (+)
Type:
Location: 25540 - 25701 (+)
Gene ID: Rep_480_c_253_18
Type: CAZyme
Location: 25972 - 28470 (+)
Type: CAZyme
Location: 25972 - 28470 (+)
Gene ID: Rep_480_c_253_19
Type: pfam
Location: 28554 - 30002 (-)
Type: pfam
Location: 28554 - 30002 (-)
Gene ID: Rep_480_c_253_20
Type: TC
Location: 30031 - 30618 (-)
Type: TC
Location: 30031 - 30618 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.