Cluster: Rep_480_CGC69
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 8
- Substrate:
- Genome ID: Rep_480
- CGC Family ID: CGCFAM_01176
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_480_c_230 | Rep_480_c_230_7 | 5818 | 7050 | + | 9.B.156.3.1 |
| pfam | Rep_480_c_230 | Rep_480_c_230_8 | 7092 | 7505 | + | YbeY |
| CAZyme | Rep_480_c_230 | Rep_480_c_230_9 | 7687 | 9678 | - | GH182 |
| CAZyme | Rep_480_c_230 | Rep_480_c_230_10 | 9746 | 10723 | - | GH43_3 |
| CAZyme | Rep_480_c_230 | Rep_480_c_230_11 | 10738 | 11769 | - | GH43_3 |
| TC | Rep_480_c_230 | Rep_480_c_230_12 | 11772 | 13595 | - | 8.A.46.1.6 |
| TC | Rep_480_c_230 | Rep_480_c_230_13 | 13631 | 16753 | - | 1.B.14.6.1 |
| CAZyme | Rep_480_c_230 | Rep_480_c_230_14 | 16956 | 19505 | - | GH31_15 |
| CAZyme | Rep_480_c_230 | Rep_480_c_230_15 | 19514 | 22471 | - | GH115 |
| CAZyme | Rep_480_c_230 | Rep_480_c_230_16 | 22497 | 23603 | - | GH105 |
| CAZyme | Rep_480_c_230 | Rep_480_c_230_17 | 23666 | 24754 | - | GH130_3 |
| CAZyme | Rep_480_c_230 | Rep_480_c_230_18 | 24831 | 27593 | - | GH2 |
Gene ID: Rep_480_c_230_7
Type: TC
Location: 5818 - 7050 (+)
Type: TC
Location: 5818 - 7050 (+)
Gene ID: Rep_480_c_230_8
Type: pfam
Location: 7092 - 7505 (+)
Type: pfam
Location: 7092 - 7505 (+)
Gene ID: Rep_480_c_230_9
Type: CAZyme
Location: 7687 - 9678 (-)
Type: CAZyme
Location: 7687 - 9678 (-)
Gene ID: Rep_480_c_230_10
Type: CAZyme
Location: 9746 - 10723 (-)
Type: CAZyme
Location: 9746 - 10723 (-)
Gene ID: Rep_480_c_230_11
Type: CAZyme
Location: 10738 - 11769 (-)
Type: CAZyme
Location: 10738 - 11769 (-)
Gene ID: Rep_480_c_230_12
Type: TC
Location: 11772 - 13595 (-)
Type: TC
Location: 11772 - 13595 (-)
Gene ID: Rep_480_c_230_13
Type: TC
Location: 13631 - 16753 (-)
Type: TC
Location: 13631 - 16753 (-)
Gene ID: Rep_480_c_230_14
Type: CAZyme
Location: 16956 - 19505 (-)
Type: CAZyme
Location: 16956 - 19505 (-)
Gene ID: Rep_480_c_230_15
Type: CAZyme
Location: 19514 - 22471 (-)
Type: CAZyme
Location: 19514 - 22471 (-)
Gene ID: Rep_480_c_230_16
Type: CAZyme
Location: 22497 - 23603 (-)
Type: CAZyme
Location: 22497 - 23603 (-)
Gene ID: Rep_480_c_230_17
Type: CAZyme
Location: 23666 - 24754 (-)
Type: CAZyme
Location: 23666 - 24754 (-)
Gene ID: Rep_480_c_230_18
Type: CAZyme
Location: 24831 - 27593 (-)
Type: CAZyme
Location: 24831 - 27593 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_480_c_230_11 | vegan > omnivore | 5.81097 | 0.02669 |
| Rep_480_c_230_11 | vegetarian > omnivore | 3.91565 | 0.02268 |
| Rep_480_c_230_12 | vegan > omnivore | 4.26162 | 0.02669 |
| Rep_480_c_230_12 | vegetarian > omnivore | 2.32156 | 0.02268 |
| Rep_480_c_230_13 | vegetarian > omnivore | 3.03119 | 0.00538 |
| Rep_480_c_230_13 | vegan > omnivore | 5.16967 | 0.02669 |
| Rep_480_c_230_15 | vegetarian > omnivore | 1.41247 | 0.00538 |
| Rep_480_c_230_15 | vegan > omnivore | 3.38739 | 0.02669 |
| Rep_480_c_230_16 | vegetarian > omnivore | 2.72513 | 0.00230 |
| Rep_480_c_230_16 | vegan > omnivore | 4.28298 | 0.02669 |
| Rep_480_c_230_17 | vegan > omnivore | 4.46327 | 0.02669 |
| Rep_480_c_230_17 | vegetarian > omnivore | 2.84311 | 0.02268 |
| Rep_480_c_230_18 | vegan > omnivore | 2.19438 | 0.02669 |
| Rep_480_c_230_18 | vegetarian > omnivore | 1.05207 | 0.02268 |