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Cluster: Rep_480_CGC65

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_480_c_222 Rep_480_c_222_2 4333 6330 - GH67
CAZyme Rep_480_c_222 Rep_480_c_222_3 6549 7508 - GH43_1
CAZyme Rep_480_c_222 Rep_480_c_222_4 7553 8668 - GH10
TC Rep_480_c_222 Rep_480_c_222_5 8665 10071 - 2.A.2.3.2
CAZyme Rep_480_c_222 Rep_480_c_222_6 10076 11737 - CE20 | CE20
CAZyme Rep_480_c_222 Rep_480_c_222_7 11769 13502 - GH35
NULL(UNKNOWN) Rep_480_c_222 Rep_480_c_222_8 13746 14132 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_480_c_222 Rep_480_c_222_9 14225 16570 - GH10
pfam Rep_480_c_222 Rep_480_c_222_10 16593 18044 - SGBP_B_XBD
pfam Rep_480_c_222 Rep_480_c_222_11 18065 19747 - SusD_RagB | SusD-like_3
TC Rep_480_c_222 Rep_480_c_222_12 19767 22922 - 1.B.14.6.1
CAZyme Rep_480_c_222 Rep_480_c_222_13 23358 25229 - CE20 | CE20
CAZyme Rep_480_c_222 Rep_480_c_222_14 25235 27265 - GH67
pfam Rep_480_c_222 Rep_480_c_222_15 27401 29356 - SusD_RagB | SusD-like_3
TC Rep_480_c_222 Rep_480_c_222_16 29372 32434 - 1.B.14.6.1
TF Rep_480_c_222 Rep_480_c_222_17 32902 36945 + HTH_AraC
CAZyme Rep_480_c_222 Rep_480_c_222_18 36969 39755 + PL40
CAZyme Rep_480_c_222 Rep_480_c_222_19 39752 41239 + GH30_2
STP Rep_480_c_222 Rep_480_c_222_20 41853 42368 + Sigma70_r2 | Sigma70_r4_2
CAZyme Rep_480_c_222 Rep_480_c_222_21 42417 43655 + CBM32
TC Rep_480_c_222 Rep_480_c_222_22 43687 46986 + 1.B.14.6.1
Gene ID: Rep_480_c_222_2
Type: CAZyme
Location: 4333 - 6330 (-)
Gene ID: Rep_480_c_222_3
Type: CAZyme
Location: 6549 - 7508 (-)
Gene ID: Rep_480_c_222_4
Type: CAZyme
Location: 7553 - 8668 (-)
Gene ID: Rep_480_c_222_5
Type: TC
Location: 8665 - 10071 (-)
Gene ID: Rep_480_c_222_6
Type: CAZyme
Location: 10076 - 11737 (-)
Gene ID: Rep_480_c_222_7
Type: CAZyme
Location: 11769 - 13502 (-)
Gene ID: Rep_480_c_222_8
Type:
Location: 13746 - 14132 (-)
Gene ID: Rep_480_c_222_9
Type: CAZyme
Location: 14225 - 16570 (-)
Gene ID: Rep_480_c_222_10
Type: pfam
Location: 16593 - 18044 (-)
Gene ID: Rep_480_c_222_11
Type: pfam
Location: 18065 - 19747 (-)
Gene ID: Rep_480_c_222_12
Type: TC
Location: 19767 - 22922 (-)
Gene ID: Rep_480_c_222_13
Type: CAZyme
Location: 23358 - 25229 (-)
Gene ID: Rep_480_c_222_14
Type: CAZyme
Location: 25235 - 27265 (-)
Gene ID: Rep_480_c_222_15
Type: pfam
Location: 27401 - 29356 (-)
Gene ID: Rep_480_c_222_16
Type: TC
Location: 29372 - 32434 (-)
Gene ID: Rep_480_c_222_17
Type: TF
Location: 32902 - 36945 (+)
Gene ID: Rep_480_c_222_18
Type: CAZyme
Location: 36969 - 39755 (+)
Gene ID: Rep_480_c_222_19
Type: CAZyme
Location: 39752 - 41239 (+)
Gene ID: Rep_480_c_222_20
Type: STP
Location: 41853 - 42368 (+)
Gene ID: Rep_480_c_222_21
Type: CAZyme
Location: 42417 - 43655 (+)
Gene ID: Rep_480_c_222_22
Type: TC
Location: 43687 - 46986 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Bacteroidaceae
→
Genus
Bacteroides
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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