Cluster: Rep_480_CGC62
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 6
- Substrate:
- Genome ID: Rep_480
- CGC Family ID: CGCFAM_00170
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_480_c_209 | Rep_480_c_209_18 | 20223 | 23360 | + | 1.B.14.6.1 |
| pfam | Rep_480_c_209 | Rep_480_c_209_19 | 23372 | 25234 | + | SusD_RagB | SusD-like_3 |
| TC | Rep_480_c_209 | Rep_480_c_209_20 | 25265 | 28042 | + | 1.B.14.6.1 |
| pfam | Rep_480_c_209 | Rep_480_c_209_21 | 28056 | 29729 | + | SusD_RagB | SusD-like_3 |
| CAZyme | Rep_480_c_209 | Rep_480_c_209_22 | 29810 | 30661 | + | GH16_3 |
| CAZyme | Rep_480_c_209 | Rep_480_c_209_23 | 30707 | 31942 | + | GH88 |
| pfam | Rep_480_c_209 | Rep_480_c_209_24 | 32227 | 32847 | + | Hydrolase |
| TC | Rep_480_c_209 | Rep_480_c_209_25 | 32927 | 33601 | - | 9.B.104.3.2 |
| CAZyme | Rep_480_c_209 | Rep_480_c_209_26 | 33776 | 35719 | + | GH133 |
| CAZyme | Rep_480_c_209 | Rep_480_c_209_27 | 35736 | 37004 | + | GT4 |
| CAZyme | Rep_480_c_209 | Rep_480_c_209_28 | 37022 | 38428 | + | GH57 |
| pfam | Rep_480_c_209 | Rep_480_c_209_29 | 38549 | 40117 | - | DUF4270 |
| CAZyme | Rep_480_c_209 | Rep_480_c_209_30 | 40140 | 40964 | - | GT5 |
Gene ID: Rep_480_c_209_18
Type: TC
Location: 20223 - 23360 (+)
Type: TC
Location: 20223 - 23360 (+)
Gene ID: Rep_480_c_209_19
Type: pfam
Location: 23372 - 25234 (+)
Type: pfam
Location: 23372 - 25234 (+)
Gene ID: Rep_480_c_209_20
Type: TC
Location: 25265 - 28042 (+)
Type: TC
Location: 25265 - 28042 (+)
Gene ID: Rep_480_c_209_21
Type: pfam
Location: 28056 - 29729 (+)
Type: pfam
Location: 28056 - 29729 (+)
Gene ID: Rep_480_c_209_22
Type: CAZyme
Location: 29810 - 30661 (+)
Type: CAZyme
Location: 29810 - 30661 (+)
Gene ID: Rep_480_c_209_23
Type: CAZyme
Location: 30707 - 31942 (+)
Type: CAZyme
Location: 30707 - 31942 (+)
Gene ID: Rep_480_c_209_24
Type: pfam
Location: 32227 - 32847 (+)
Type: pfam
Location: 32227 - 32847 (+)
Gene ID: Rep_480_c_209_25
Type: TC
Location: 32927 - 33601 (-)
Type: TC
Location: 32927 - 33601 (-)
Gene ID: Rep_480_c_209_26
Type: CAZyme
Location: 33776 - 35719 (+)
Type: CAZyme
Location: 33776 - 35719 (+)
Gene ID: Rep_480_c_209_27
Type: CAZyme
Location: 35736 - 37004 (+)
Type: CAZyme
Location: 35736 - 37004 (+)
Gene ID: Rep_480_c_209_28
Type: CAZyme
Location: 37022 - 38428 (+)
Type: CAZyme
Location: 37022 - 38428 (+)
Gene ID: Rep_480_c_209_29
Type: pfam
Location: 38549 - 40117 (-)
Type: pfam
Location: 38549 - 40117 (-)
Gene ID: Rep_480_c_209_30
Type: CAZyme
Location: 40140 - 40964 (-)
Type: CAZyme
Location: 40140 - 40964 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.