Cluster: Rep_480_CGC45
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 5
- Substrate: arabinogalactan
- Genome ID: Rep_480
- CGC Family ID: CGCFAM_00646
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_480_c_154 | Rep_480_c_154_20 | 30075 | 31004 | + | GT27 |
| TC | Rep_480_c_154 | Rep_480_c_154_21 | 31035 | 33266 | + | 3.A.1.112.9 |
| pfam | Rep_480_c_154 | Rep_480_c_154_22 | 33271 | 34581 | + | HlyD_3 | Biotin_lipoyl_2 |
| TC | Rep_480_c_154 | Rep_480_c_154_23 | 34774 | 37932 | + | 1.B.14.6.1 |
| pfam | Rep_480_c_154 | Rep_480_c_154_24 | 37988 | 39886 | + | SusD_RagB | SusD-like_3 |
| TC | Rep_480_c_154 | Rep_480_c_154_25 | 39923 | 42940 | + | 1.B.14.6.1 |
| pfam | Rep_480_c_154 | Rep_480_c_154_26 | 42971 | 44638 | + | SusD_RagB | SusD-like_3 |
| CAZyme | Rep_480_c_154 | Rep_480_c_154_27 | 44673 | 45572 | + | CBM32 |
| CAZyme | Rep_480_c_154 | Rep_480_c_154_28 | 45594 | 47099 | + | GH16_3 |
| CAZyme | Rep_480_c_154 | Rep_480_c_154_29 | 47185 | 48270 | + | GH43_24 |
| CAZyme | Rep_480_c_154 | Rep_480_c_154_30 | 48562 | 50958 | - | GH35 |
Gene ID: Rep_480_c_154_20
Type: CAZyme
Location: 30075 - 31004 (+)
Type: CAZyme
Location: 30075 - 31004 (+)
Gene ID: Rep_480_c_154_21
Type: TC
Location: 31035 - 33266 (+)
Type: TC
Location: 31035 - 33266 (+)
Gene ID: Rep_480_c_154_22
Type: pfam
Location: 33271 - 34581 (+)
Type: pfam
Location: 33271 - 34581 (+)
Gene ID: Rep_480_c_154_23
Type: TC
Location: 34774 - 37932 (+)
Type: TC
Location: 34774 - 37932 (+)
Gene ID: Rep_480_c_154_24
Type: pfam
Location: 37988 - 39886 (+)
Type: pfam
Location: 37988 - 39886 (+)
Gene ID: Rep_480_c_154_25
Type: TC
Location: 39923 - 42940 (+)
Type: TC
Location: 39923 - 42940 (+)
Gene ID: Rep_480_c_154_26
Type: pfam
Location: 42971 - 44638 (+)
Type: pfam
Location: 42971 - 44638 (+)
Gene ID: Rep_480_c_154_27
Type: CAZyme
Location: 44673 - 45572 (+)
Type: CAZyme
Location: 44673 - 45572 (+)
Gene ID: Rep_480_c_154_28
Type: CAZyme
Location: 45594 - 47099 (+)
Type: CAZyme
Location: 45594 - 47099 (+)
Gene ID: Rep_480_c_154_29
Type: CAZyme
Location: 47185 - 48270 (+)
Type: CAZyme
Location: 47185 - 48270 (+)
Gene ID: Rep_480_c_154_30
Type: CAZyme
Location: 48562 - 50958 (-)
Type: CAZyme
Location: 48562 - 50958 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_480_c_154_30 | vegetarian > omnivore | 1.14780 | 0.02268 |
| Rep_480_c_154_30 | vegetarian > vegan | 1.03415 | 0.04583 |