Cluster: Rep_480_CGC2
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 8
- Substrate:
- Genome ID: Rep_480
- CGC Family ID: CGCFAM_02278
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_480_c_13 | Rep_480_c_13_8 | 7226 | 8434 | + | GH76 |
| CAZyme | Rep_480_c_13 | Rep_480_c_13_9 | 8467 | 9930 | + | GH125 |
| pfam | Rep_480_c_13 | Rep_480_c_13_10 | 9946 | 10650 | + | Lipase_GDSL | Lipase_GDSL_2 |
| CAZyme | Rep_480_c_13 | Rep_480_c_13_11 | 10682 | 12388 | + | CBM32 | GH43_28 |
| CAZyme | Rep_480_c_13 | Rep_480_c_13_12 | 12414 | 14888 | + | GH3 |
| CAZyme | Rep_480_c_13 | Rep_480_c_13_13 | 14920 | 17394 | + | GH3 |
| pfam | Rep_480_c_13 | Rep_480_c_13_14 | 17478 | 18818 | + | NHL | TIG |
| TC | Rep_480_c_13 | Rep_480_c_13_15 | 18843 | 21977 | + | 1.B.14.6.1 |
| pfam | Rep_480_c_13 | Rep_480_c_13_16 | 21990 | 24044 | + | SusD_RagB | SusD-like_3 |
| pfam | Rep_480_c_13 | Rep_480_c_13_17 | 24063 | 25031 | + | BT_3987-like_N | BT_3044-like_C | DUF4973 |
| CAZyme | Rep_480_c_13 | Rep_480_c_13_18 | 25143 | 27290 | + | GH31_1 |
| CAZyme | Rep_480_c_13 | Rep_480_c_13_19 | 27484 | 29295 | + | GH97 |
| CAZyme | Rep_480_c_13 | Rep_480_c_13_20 | 29377 | 31401 | + | GH127 |
Gene ID: Rep_480_c_13_8
Type: CAZyme
Location: 7226 - 8434 (+)
Type: CAZyme
Location: 7226 - 8434 (+)
Gene ID: Rep_480_c_13_9
Type: CAZyme
Location: 8467 - 9930 (+)
Type: CAZyme
Location: 8467 - 9930 (+)
Gene ID: Rep_480_c_13_10
Type: pfam
Location: 9946 - 10650 (+)
Type: pfam
Location: 9946 - 10650 (+)
Gene ID: Rep_480_c_13_11
Type: CAZyme
Location: 10682 - 12388 (+)
Type: CAZyme
Location: 10682 - 12388 (+)
Gene ID: Rep_480_c_13_12
Type: CAZyme
Location: 12414 - 14888 (+)
Type: CAZyme
Location: 12414 - 14888 (+)
Gene ID: Rep_480_c_13_13
Type: CAZyme
Location: 14920 - 17394 (+)
Type: CAZyme
Location: 14920 - 17394 (+)
Gene ID: Rep_480_c_13_14
Type: pfam
Location: 17478 - 18818 (+)
Type: pfam
Location: 17478 - 18818 (+)
Gene ID: Rep_480_c_13_15
Type: TC
Location: 18843 - 21977 (+)
Type: TC
Location: 18843 - 21977 (+)
Gene ID: Rep_480_c_13_16
Type: pfam
Location: 21990 - 24044 (+)
Type: pfam
Location: 21990 - 24044 (+)
Gene ID: Rep_480_c_13_17
Type: pfam
Location: 24063 - 25031 (+)
Type: pfam
Location: 24063 - 25031 (+)
Gene ID: Rep_480_c_13_18
Type: CAZyme
Location: 25143 - 27290 (+)
Type: CAZyme
Location: 25143 - 27290 (+)
Gene ID: Rep_480_c_13_19
Type: CAZyme
Location: 27484 - 29295 (+)
Type: CAZyme
Location: 27484 - 29295 (+)
Gene ID: Rep_480_c_13_20
Type: CAZyme
Location: 29377 - 31401 (+)
Type: CAZyme
Location: 29377 - 31401 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_480_c_13_19 | vegan > omnivore | 2.39986 | 0.02669 |