Cluster: Rep_480_CGC13
🧬 Cluster Details
- Gene Count: 16
- CAZyme Count: 3
- Substrate:
- Genome ID: Rep_480
- CGC Family ID: CGCFAM_02294
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_480_c_45 | Rep_480_c_45_5 | 3970 | 4338 | + | 2.A.7.34.3 |
| pfam | Rep_480_c_45 | Rep_480_c_45_6 | 4345 | 5367 | - | ApbE |
| TC | Rep_480_c_45 | Rep_480_c_45_7 | 5383 | 5961 | - | 2.A.107.1.2 |
| pfam | Rep_480_c_45 | Rep_480_c_45_8 | 5976 | 6746 | - | DUF6048 |
| pfam | Rep_480_c_45 | Rep_480_c_45_9 | 6715 | 7197 | - | DUF6452 |
| CAZyme | Rep_480_c_45 | Rep_480_c_45_10 | 7200 | 8150 | - | GT2 |
| pfam | Rep_480_c_45 | Rep_480_c_45_11 | 8218 | 8763 | - | DUF4199 |
| STP | Rep_480_c_45 | Rep_480_c_45_12 | 9173 | 12079 | + | Y_Y_Y |
| TC | Rep_480_c_45 | Rep_480_c_45_13 | 12554 | 15697 | + | 1.B.14.6.1 |
| pfam | Rep_480_c_45 | Rep_480_c_45_14 | 15717 | 17234 | + | SusD_RagB | SusD-like_3 |
| NULL(UNKNOWN) | Rep_480_c_45 | Rep_480_c_45_15 | 17254 | 18645 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_480_c_45 | Rep_480_c_45_16 | 18717 | 19823 | + | GH16_3 |
| CAZyme | Rep_480_c_45 | Rep_480_c_45_17 | 19830 | 22082 | + | GH3 |
| pfam | Rep_480_c_45 | Rep_480_c_45_18 | 22184 | 23464 | - | Enolase_C | Enolase_N | MR_MLE_C |
| pfam | Rep_480_c_45 | Rep_480_c_45_19 | 23544 | 24191 | - | Pentapeptide | Pentapeptide | Pentapeptide_4 | Pentapeptide_4 |
| TC | Rep_480_c_45 | Rep_480_c_45_20 | 24235 | 24612 | - | 1.A.43.1.1 |
Gene ID: Rep_480_c_45_5
Type: TC
Location: 3970 - 4338 (+)
Type: TC
Location: 3970 - 4338 (+)
Gene ID: Rep_480_c_45_6
Type: pfam
Location: 4345 - 5367 (-)
Type: pfam
Location: 4345 - 5367 (-)
Gene ID: Rep_480_c_45_7
Type: TC
Location: 5383 - 5961 (-)
Type: TC
Location: 5383 - 5961 (-)
Gene ID: Rep_480_c_45_8
Type: pfam
Location: 5976 - 6746 (-)
Type: pfam
Location: 5976 - 6746 (-)
Gene ID: Rep_480_c_45_9
Type: pfam
Location: 6715 - 7197 (-)
Type: pfam
Location: 6715 - 7197 (-)
Gene ID: Rep_480_c_45_10
Type: CAZyme
Location: 7200 - 8150 (-)
Type: CAZyme
Location: 7200 - 8150 (-)
Gene ID: Rep_480_c_45_11
Type: pfam
Location: 8218 - 8763 (-)
Type: pfam
Location: 8218 - 8763 (-)
Gene ID: Rep_480_c_45_12
Type: STP
Location: 9173 - 12079 (+)
Type: STP
Location: 9173 - 12079 (+)
Gene ID: Rep_480_c_45_13
Type: TC
Location: 12554 - 15697 (+)
Type: TC
Location: 12554 - 15697 (+)
Gene ID: Rep_480_c_45_14
Type: pfam
Location: 15717 - 17234 (+)
Type: pfam
Location: 15717 - 17234 (+)
Gene ID: Rep_480_c_45_15
Type:
Location: 17254 - 18645 (+)
Type:
Location: 17254 - 18645 (+)
Gene ID: Rep_480_c_45_16
Type: CAZyme
Location: 18717 - 19823 (+)
Type: CAZyme
Location: 18717 - 19823 (+)
Gene ID: Rep_480_c_45_17
Type: CAZyme
Location: 19830 - 22082 (+)
Type: CAZyme
Location: 19830 - 22082 (+)
Gene ID: Rep_480_c_45_18
Type: pfam
Location: 22184 - 23464 (-)
Type: pfam
Location: 22184 - 23464 (-)
Gene ID: Rep_480_c_45_19
Type: pfam
Location: 23544 - 24191 (-)
Type: pfam
Location: 23544 - 24191 (-)
Gene ID: Rep_480_c_45_20
Type: TC
Location: 24235 - 24612 (-)
Type: TC
Location: 24235 - 24612 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.