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Cluster: Rep_479_CGC9

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_479_c_30 Rep_479_c_30_9 13146 14549 + GH140
TF Rep_479_c_30 Rep_479_c_30_10 14602 19023 - HTH_AraC
CAZyme Rep_479_c_30 Rep_479_c_30_11 19139 20293 + CE19
TF Rep_479_c_30 Rep_479_c_30_12 20315 24730 + HTH_AraC
CAZyme Rep_479_c_30 Rep_479_c_30_13 24837 25979 - CE19
pfam Rep_479_c_30 Rep_479_c_30_14 26031 27572 - SusD_RagB | SusD-like_3
TC Rep_479_c_30 Rep_479_c_30_15 27586 30579 - 1.B.14.6.1
CAZyme Rep_479_c_30 Rep_479_c_30_16 30983 32296 - CE7
CAZyme Rep_479_c_30 Rep_479_c_30_17 32316 34085 - CE12 | CE8
STP Rep_479_c_30 Rep_479_c_30_18 34235 34582 + AraC_binding
CAZyme Rep_479_c_30 Rep_479_c_30_19 34709 35677 - CE8
CAZyme Rep_479_c_30 Rep_479_c_30_20 35680 36903 - GH105
TC Rep_479_c_30 Rep_479_c_30_21 37197 38600 + 4.A.5.1.4
pfam Rep_479_c_30 Rep_479_c_30_22 38624 39580 + KduI
TC Rep_479_c_30 Rep_479_c_30_23 39723 41174 + 2.A.1.14.25
pfam Rep_479_c_30 Rep_479_c_30_24 41308 42441 - AAA_14 | DUF4143
NULL(UNKNOWN) Rep_479_c_30 Rep_479_c_30_25 42461 42619 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_479_c_30 Rep_479_c_30_26 42565 43782 - GH88
CAZyme Rep_479_c_30 Rep_479_c_30_27 43852 45801 - GH97
CAZyme Rep_479_c_30 Rep_479_c_30_28 45864 47804 - GH146
pfam Rep_479_c_30 Rep_479_c_30_29 48034 49419 - Alginate_lyase
peptidase Rep_479_c_30 Rep_479_c_30_30 49432 50994 - U69.UPW
TC Rep_479_c_30 Rep_479_c_30_31 51042 52799 - 8.A.46.1.3
TC Rep_479_c_30 Rep_479_c_30_32 52812 56018 - 1.B.14.6.1
Gene ID: Rep_479_c_30_9
Type: CAZyme
Location: 13146 - 14549 (+)
Gene ID: Rep_479_c_30_10
Type: TF
Location: 14602 - 19023 (-)
Gene ID: Rep_479_c_30_11
Type: CAZyme
Location: 19139 - 20293 (+)
Gene ID: Rep_479_c_30_12
Type: TF
Location: 20315 - 24730 (+)
Gene ID: Rep_479_c_30_13
Type: CAZyme
Location: 24837 - 25979 (-)
Gene ID: Rep_479_c_30_14
Type: pfam
Location: 26031 - 27572 (-)
Gene ID: Rep_479_c_30_15
Type: TC
Location: 27586 - 30579 (-)
Gene ID: Rep_479_c_30_16
Type: CAZyme
Location: 30983 - 32296 (-)
Gene ID: Rep_479_c_30_17
Type: CAZyme
Location: 32316 - 34085 (-)
Gene ID: Rep_479_c_30_18
Type: STP
Location: 34235 - 34582 (+)
Gene ID: Rep_479_c_30_19
Type: CAZyme
Location: 34709 - 35677 (-)
Gene ID: Rep_479_c_30_20
Type: CAZyme
Location: 35680 - 36903 (-)
Gene ID: Rep_479_c_30_21
Type: TC
Location: 37197 - 38600 (+)
Gene ID: Rep_479_c_30_22
Type: pfam
Location: 38624 - 39580 (+)
Gene ID: Rep_479_c_30_23
Type: TC
Location: 39723 - 41174 (+)
Gene ID: Rep_479_c_30_24
Type: pfam
Location: 41308 - 42441 (-)
Gene ID: Rep_479_c_30_25
Type:
Location: 42461 - 42619 (+)
Gene ID: Rep_479_c_30_26
Type: CAZyme
Location: 42565 - 43782 (-)
Gene ID: Rep_479_c_30_27
Type: CAZyme
Location: 43852 - 45801 (-)
Gene ID: Rep_479_c_30_28
Type: CAZyme
Location: 45864 - 47804 (-)
Gene ID: Rep_479_c_30_29
Type: pfam
Location: 48034 - 49419 (-)
Gene ID: Rep_479_c_30_30
Type: peptidase
Location: 49432 - 50994 (-)
Gene ID: Rep_479_c_30_31
Type: TC
Location: 51042 - 52799 (-)
Gene ID: Rep_479_c_30_32
Type: TC
Location: 52812 - 56018 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Bacteroidaceae
→
Genus
Bacteroides
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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